PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G10950.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 1571aa    MW: 173790 Da    PI: 5.7325
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G10950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-0615511571526
                    --SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH    5 lCrffartGtCkyGdrCkFaHg 26  
                    +C+ f+++G+C+ G++C++ H+
  OB03G10950.1 1551 ICK-FHESGYCRKGASCNYLHP 1571
                    799.*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.103.2E-855109IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579036.42E-859111IPR011011Zinc finger, FYVE/PHD-type
SMARTSM002491.6E-664110IPR001965Zinc finger, PHD-type
CDDcd155689.52E-2064109No hitNo description
PROSITE patternPS01359065125IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001516.3E-5252340IPR019835SWIB domain
SuperFamilySSF475922.07E-21258336IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.102.6E-26259342IPR003121SWIB/MDM2 domain
PfamPF022012.2E-16262335IPR003121SWIB/MDM2 domain
PROSITE profilePS5136031.461396528IPR004343Plus-3 domain
SuperFamilySSF1590424.71E-34396521IPR004343Plus-3 domain
SMARTSM007194.1E-46396505IPR004343Plus-3 domain
PfamPF031268.3E-26401504IPR004343Plus-3 domain
SuperFamilySSF552778.24E-15661717IPR003169GYF domain
PROSITE profilePS5082914.435664716IPR003169GYF domain
SMARTSM004441.4E-12665718IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.4E-14666717IPR003169GYF domain
PfamPF022134.4E-9667706IPR003169GYF domain
PROSITE profilePS5010313.88215461571IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.48E-515481570IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034968Biological Processhistone lysine methylation
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1571 aa     Download sequence    Send to blast
MDDSQFLGSI IGEPAQAHQA PAEAGATVGV KRRRGRPPKK RDGAAAAAGP GEPARKRVDE  60
EEVVCFICFD GGNLVVCDRR GCPKVYHPAC IKRDEAFFQS RSKWNCGWHI CSSCEKAVHY  120
MCYTCTYSLC KIVVDFDDQN SWEYLFKLYW LDLKGKLSLT LEELTSAKSR WNAPTTYTRK  180
EKDESSDDLY DANNDDDAGS DCSSGKRKWN SSRKKGQKRQ KTNSDCSIAT KKFESVTRDS  240
ETLPSKVPIQ EASLPVDTKW ASPELLEFVG HMRNGDLSFI SQFDVQALLL DYIKQNNLRD  300
PQRKSQIICD SRLHRLFRKT RVAHFEMLKL LEMHFLVSEP SAVNDDSQGI TNPSSAQIDH  360
ASGYSDMAAK FSPDRRRRMH RKMERESQAN PEDYAAIDMH NISLIYLRRS LMEDLIDDPT  420
FSDKISGAFV RIRISGLGQK QDMYRLVKVV GTQKVPEKYS IGKKTTNLAL EILNLNKKEI  480
ITMDTVSNQD FTEEECKRLR QSMKYDLISR LKVGDIQAKA NIFQLVRVND LLNTPEERAR  540
KINEVLDVHV DSHMDPDYES AEEFGSKKTA EWNVNWARSD PFGSPVKVKY PNTVQKNCDA  600
TRHLKNQSKQ NTVRKPVVAR NSENPRSSVG MDIPKSVTNA KSTMCGTTPL PYSGVTVSGD  660
IEPEKVWHYK DPSGNVQGPF TLLQLSKWTS YFPRDMRVWL TFESEERSLL LTEVLSKQPK  720
DFGQPAALTT SSKSTLADTG QNRSTQLVDL NKAPSPVGYS MLNSSETTIQ CTKHSGPERE  780
SVNSLDDRLS LTMDSVPLKD TKDSNSQPIY QIKHSSFPPS SGSPRRQSDL HHDEVQGGRS  840
GEWNNQHNSG EMWSPAMPQT SSSAHSNVES HHNHYALCSQ AKSFAPATPV EDRGSSSPSG  900
MLSHSERAPI CSPQSAPSVS ASDTCKMEET MNQQKPLEAD ISNASVNQSP NSKILPESSP  960
DNQDIEREYP SPPPMSECKE LSPQSRTNRE SSPDNQEVER QYPSPQPISE SKEVPPQLKI  1020
IPESSDNHDI EREHPSPPPI PESKEQSPQS KILPESSPDN QDIEHEHPNP PPIPESKELS  1080
PQCKILPESS PDNQGIKCEY PSPTPIPESK GLSLQSKVPG PSHDDQDVGH EYPCPTPICE  1140
SKEVSRQSKI PSGSSLDNQD IEHGYHSPNL ISESKELTIN LSQSISLAPE KIASGEDSSL  1200
PFIFPKSPRA GDGALKSVSD IETTHIEGGD SNVKELYVKE ELYVESTVIR EDMVVNPASG  1260
VESVDMSENL LESLMEQSCG TFYLDGAAAL EGFLSKEEPQ CSSPIALSTC SSPIALSPWG  1320
ESGYYQGDSV GSSLWGVQDD DPICEMWQLS TQTPAVQYSS GTTAHFIDEV TVTQVNNEII  1380
PRNTTPGEKV ELPNSGACTV WGLVEQMNPE ANDTSVSMID RSTGLVCSQP SANGGPNVDT  1440
SRNTNHNTNL SLSHETAVPL SKGSGEASRK PGCATDLNVA TSGEALGNTK NWNPSAGNAN  1500
RGSQRSHHRD RYSQISESWL LSSNYSRSRS DGFGSGGSSR STPRGQTQRG ICKFHESGYC  1560
RKGASCNYLH P
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G10950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650969.20.0PREDICTED: uncharacterized protein LOC102711416
TrEMBLJ3LJ690.0J3LJ69_ORYBR; Uncharacterized protein
STRINGOB03G10950.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27091822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.11e-152DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding