PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G11610.1
Common NameLOC102718995
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 310aa    MW: 33966 Da    PI: 9.8874
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G11610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.78.3e-3240144199
                   EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE. CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefe 91 
                   f+kv tpsdv+k++rlv+pk++ae++    + ++e++  l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F +  g+  +++
  OB03G11610.1  40 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSASNEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGvGEaARGR 136
                   89***************************955667889*************************************************6658889999 PP

                   .EEEEE-S CS
            B3  92 lvvkvfrk 99 
                   l++ ++r+
  OB03G11610.1 137 LFIDWRRR 144
                   ***99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-4033144IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.02E-2937128IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-2538125No hitNo description
PfamPF023621.2E-2840144IPR003340B3 DNA binding domain
SMARTSM010192.4E-2140145IPR003340B3 DNA binding domain
PROSITE profilePS5086314.36740145IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEFITPIVRP SAAAAAGVGG GEHESSRGLP AEAVEKEHMF DKVVTPSDVG KLNRLVIPKQ  60
HAEKYFPLDS ASNEKGLLLS FEDRTGKPWR FRYSYWNSSQ SYVMTKGWSR FVKEKRLDAG  120
DTVSFGRGVG EAARGRLFID WRRRPDVVAA LAPPTHRFQF PSSIPFAPWT HHHGHGSAGA  180
GSRFLLPPST SIYDHHHRRH SHAAVGYDGD AAATDSRQGL FYRPLQPHQQ HQHQHHPAVV  240
LETVPVRIAA GHAEPSATPS KRVRLFGVNL DCANSEEDAG VGKTPLQLPS PPSSSSSSSG  300
KARCSLNLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-65351473116B3 domain-containing transcription factor NGA1
5os9_B4e-65351473116B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G11610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2104910.0AC210491.1 Oryza glaberrima clone OG_BBa0088K23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690338.10.0PREDICTED: B3 domain-containing protein Os03g0120900
RefseqXP_015690339.10.0PREDICTED: B3 domain-containing protein Os03g0120900
RefseqXP_015690340.10.0PREDICTED: B3 domain-containing protein Os03g0120900
SwissprotQ8LMR91e-156Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLJ3LJD50.0J3LJD5_ORYBR; Uncharacterized protein
STRINGOB03G11610.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-79B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]