PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G11710.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 257aa    MW: 27797.9 Da    PI: 9.0216
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G11710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.8e-14101152155
                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +r++h ++Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+++  A++Y+k+L+
  OB03G11710.1 101 QRMTHIAVERNRRRLMNDHLASLRSLIPSS---YIPRGDQATVVGGAIDYVKQLE 152
                   79****************************...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.26E-1592161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.84E-1499155No hitNo description
Gene3DG3DSA:4.10.280.101.6E-1499155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.154100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11101152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9106157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEQWAEQPAG AAQMPFLALL QGAMEADGGG DGRKRPAAFA SCPCPPVADI DLLESCVTQA  60
AAPPVAAPAT RAERRRKRPR PRPRAAPPPE KRKKPEEAES QRMTHIAVER NRRRLMNDHL  120
ASLRSLIPSS YIPRGDQATV VGGAIDYVKQ LEQQLVALQA AVAEQRGVGM VATAATAASD  180
GVFVSPQYTR LVRAVAAMED LRLTVLHLAV TSVGHDAVVY CFNLKVNNFT TLSDFVESNS  240
TFIQCSFSSF KLHAILP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17383RRRKRPRPRPR
27581RKRPRPR
37593RKRPRPRPRAAPPPEKRKK
47680KRPRP
5101112RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G11710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2328821e-159AC232882.1 Oryza officinalis clone OO__Ba0006A08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151391.19e-81transcription factor bHLH57-like
SwissprotO810376e-36BH070_ARATH; Transcription factor bHLH70
TrEMBLJ3LJE50.0J3LJE5_ORYBR; Uncharacterized protein
STRINGOB03G11710.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-27bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]