PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G11790.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 190aa    MW: 22170.2 Da    PI: 6.6858
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G11790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.54.6e-081301731454
                   HHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox  14 eLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   +L++  +   k +yp+++++++L +++gL+ +q+ +WF N+R +
  OB03G11790.1 130 ILKQWWQqhsKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 173
                   5555555222469*****************************87 PP
2ELK26.31.7e-0994115122
           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                   ELK +L++++++++ ++++E++
  OB03G11790.1  94 ELKIELKQGFKSRIEDVREEIL 115
                   9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012564.7E-8138IPR005541KNOX2
PfamPF037912.0E-10237IPR005541KNOX2
PROSITE profilePS512139.13294114IPR005539ELK domain
PROSITE profilePS5007111.693114177IPR001356Homeobox domain
SMARTSM003894.9E-10116181IPR001356Homeobox domain
SuperFamilySSF466892.35E-16116181IPR009057Homeodomain-like
CDDcd000861.00E-10117178No hitNo description
Gene3DG3DSA:1.10.10.601.9E-25121180IPR009057Homeodomain-like
PfamPF059205.0E-18134173IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MMLLCSFREQ LQQHVRVHAV EAVMACREIE QSLQDLTGAT LEEGTGATMS EDEEDSQMLE  60
APMDMGSDGH DLMGFGPLMP TDSERSLMER VRQELKIELK QGFKSRIEDV REEILRKRRA  120
GKLPGDTTTI LKQWWQQHSK WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHNNSQ  180
TSTLKSKRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170189RKRNWHNNSQTSTLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G11790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076290.0AB007629.1 Oryza sativa Japonica Group HOS66 mRNA, partial cds.
GenBankAB0618190.0AB061819.1 Oryza sativa Japonica Group HOS66 mRNA for KNOX family class 2 homeodomain protein, complete cds.
GenBankAK0603160.0AK060316.1 Oryza sativa Japonica Group cDNA clone:001-007-E04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689748.11e-139PREDICTED: homeobox protein knotted-1-like 3
SwissprotQ94LW31e-134KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLJ3LJF31e-138J3LJF3_ORYBR; Uncharacterized protein
STRINGOB03G11790.11e-139(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-105KNOTTED-like homeobox of Arabidopsis thaliana 7