PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB03G12130.1

Common Name

LOC102701244

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 209aa MW: 23118.2 Da PI: 9.1018

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB03G12130.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.9	5.9e-10	61	118	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr +r NR +A rs +RK +i+eLe+kv+ L++e ++L ++ l+ +a l ++ OB03G12130.1 61 KRVKRVLANRQSAARSKERKMRYIAELEQKVQILQSEATKLSTQVTILQRDSAGLATQ 118 999***************************************9998888887777666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.5E-17	57	121	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.898	59	122	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.2E-9	61	119	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.0E-11	61	118	No hit	No description
SuperFamily	SSF57959	1.41E-11	61	112	No hit	No description
CDD	cd14703	2.16E-18	62	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MDSLIGKFNF TATAAAAAAN GAGLGPNRFS LEFGSGEFTT VEMKKIMADE KLAEMALADP 60 KRVKRVLANR QSAARSKERK MRYIAELEQK VQILQSEATK LSTQVTILQR DSAGLATQNN 120 ELKFRLQAME QQAHLRDALN EALTTEVQRL KLATAELGDT CSSSGLVQQI QLNTQNQMFQ 180 LQQPQQAIPF YQLQQTQQNG AAKNNEANE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:11390974, ECO:0000269\|PubMed:12855676, ECO:0000269\|PubMed:14704272, ECO:0000269\|PubMed:9311985}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB03G12130.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728166	1e-137	KJ728166.1 Zea mays clone pUT6436 bZIP transcription factor (bZIP64) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006649313.1	1e-150	PREDICTED: transcription factor RF2a-like
Swissprot	Q69IL4	5e-49	RF2A_ORYSJ; Transcription factor RF2a
TrEMBL	J3LJI7	1e-148	J3LJI7_ORYBR; Uncharacterized protein
STRING	OB03G12130.1	1e-149	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3536	35	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	6e-66	bZIP family protein

Link Out ? help Back to Top
Entrez Gene	102701244

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Ordiz MI,Yang J,Barbazuk WB,Beachy RN Functional analysis of the activation domain of RF2a, a rice transcription factor. Plant Biotechnol. J., 2010. 8(7): p. 835-44 [PMID:20408988]