PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G12320.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 144aa    MW: 16257 Da    PI: 11.6448
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G12320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.51.3e-322881255
       G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                  prlrWtp+LH++Fv+a+++LGG++kAtPk++l+lm+v gLt++hvkSHLQ+YR 
  OB03G12320.1 28 PRLRWTPDLHHCFVHAIHKLGGQDKATPKRVLQLMGVGGLTISHVKSHLQMYRN 81
                  8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.6532484IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-312484IPR009057Homeodomain-like
SuperFamilySSF466891.08E-162683IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-252881IPR006447Myb domain, plants
PfamPF002491.4E-102980IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MTMVRAAMAA GGRERNGGVR QYNRSKVPRL RWTPDLHHCF VHAIHKLGGQ DKATPKRVLQ  60
LMGVGGLTIS HVKSHLQMYR NMRNDLAMQG TGYRCINRWI RSTRMEVVWK FGLICSSVIM  120
MSVMSPASAA TPQSLERSHC FTSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A7e-202983357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-202983357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-202983357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-202983357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G12320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0689108e-82BT068910.1 Zea mays full-length cDNA clone ZM_BFc0191L18 mRNA, complete cds.
GenBankHQ8587028e-82HQ858702.1 Zea mays clone UT1158 G2-like transcription factor mRNA, partial cds.
GenBankKJ7268138e-82KJ726813.1 Zea mays clone pUT3230 G2-like transcription factor (GLK48) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880094.16e-57uncharacterized protein LOC4331498 isoform X1
RefseqXP_025880095.16e-57uncharacterized protein LOC4331498 isoform X2
TrEMBLJ3LJK61e-104J3LJK6_ORYBR; Uncharacterized protein
STRINGOB03G12320.11e-104(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76102950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.16e-31G2-like family protein