PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB03G12460.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 898aa MW: 101031 Da PI: 7.9108

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB03G12460.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.5	2.6e-28	576	626	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl+dl+k+F++++k+AAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ OB03G12460.1 576 EKTVSLQDLRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 626 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.029	565	646	IPR003035	RWP-RK domain
Pfam	PF02042	6.5E-26	578	626	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	4.4E-26	798	882	No hit	No description
SuperFamily	SSF54277	8.1E-23	798	882	No hit	No description
SMART	SM00666	9.3E-26	800	883	IPR000270	PB1 domain
PROSITE profile	PS51745	23.437	800	883	IPR000270	PB1 domain
Pfam	PF00564	6.0E-18	801	882	IPR000270	PB1 domain
CDD	cd06407	5.35E-43	801	882	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 898 aa Download sequence Send to blast
MRDERNGRYR RRRPGSHGGV PAGDAGARFV GVLASRRVPG SEPLLPAVRP RQQRHRLDSS 60 PRXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 120 XXXXXLTTCG QPFWLDRRNH RLASYRSVSM KYQFSADESS RADLGLPGRV FVGRVPEWTP 180 DVRYFSNEEY PRVQHAQYFD IRGSIALPVF EPRSRACLGV VELVMTTQKI NYSTEIENIC 240 SALKEVDLRS SDVSSDPRSK VVDTSYRAIV PEIMDVLRAV CDTHNLPLAQ TWIPCICQAK 300 RGTRHSDERF KYCVSTVDEA CYVRDCSVLG FHQACAEHHL FRGEGIVGKA FGTNEPCFSP 360 DITAYSKTQY PLSHHAKLFS LRAAVAIRLR SVRTGNLDFV LEFFLPLKCI KTEEQRAMLN 420 SLSNTIQQVC YTLRVVTPKE LVNDEPFEVS QPTRPEFYAK SVHENLDELC SGINVPGRTT 480 TLEASEEVSS WIAGLADAQK GAKGEIDVPF EFSKHDDEGF SVTAGWHTSL VIAPEGSIFS 540 GFKHHEDYDV KENTCSSDPS HSNSDKAVEK RRTKTEKTVS LQDLRKHFAG SLKEAAKNLG 600 VCPTTLKRIC RQHGINRWPS RKIKKVGHSL KKLQMVIDSV HGPEGTVQLS SLYENFTKTT 660 WSERELQGNA IFPASEQNFQ LEPSIPDRPC EGRFTSHTSG SNSLSPSCSH SSNSSLGCSS 720 GPKPQQQHGS APQLAVKQEI SMEEIHGSTP IKSASHAEAE LQMFVEERPA TLFRSQSQVL 780 VSEHKQTENM SNMQKARSDS LKIKAIYGEE RCIFRLQPSW SFQRLKEEIV KRFGIAQDTH 840 VDLKYLDDES EWVLLTCDAD LLECIDVYKS SSNQTVRILV NPSIQPVLGA SFGQTGLS

Sequence ? help Back to Top

Protein Sequence Length: 898 aa Download sequence Send to blast

MRDERNGRYR RRRPGSHGGV PAGDAGARFV GVLASRRVPG SEPLLPAVRP RQQRHRLDSS  60
PRXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXLTTCG QPFWLDRRNH RLASYRSVSM KYQFSADESS RADLGLPGRV FVGRVPEWTP  180
DVRYFSNEEY PRVQHAQYFD IRGSIALPVF EPRSRACLGV VELVMTTQKI NYSTEIENIC  240
SALKEVDLRS SDVSSDPRSK VVDTSYRAIV PEIMDVLRAV CDTHNLPLAQ TWIPCICQAK  300
RGTRHSDERF KYCVSTVDEA CYVRDCSVLG FHQACAEHHL FRGEGIVGKA FGTNEPCFSP  360
DITAYSKTQY PLSHHAKLFS LRAAVAIRLR SVRTGNLDFV LEFFLPLKCI KTEEQRAMLN  420
SLSNTIQQVC YTLRVVTPKE LVNDEPFEVS QPTRPEFYAK SVHENLDELC SGINVPGRTT  480
TLEASEEVSS WIAGLADAQK GAKGEIDVPF EFSKHDDEGF SVTAGWHTSL VIAPEGSIFS  540
GFKHHEDYDV KENTCSSDPS HSNSDKAVEK RRTKTEKTVS LQDLRKHFAG SLKEAAKNLG  600
VCPTTLKRIC RQHGINRWPS RKIKKVGHSL KKLQMVIDSV HGPEGTVQLS SLYENFTKTT  660
WSERELQGNA IFPASEQNFQ LEPSIPDRPC EGRFTSHTSG SNSLSPSCSH SSNSSLGCSS  720
GPKPQQQHGS APQLAVKQEI SMEEIHGSTP IKSASHAEAE LQMFVEERPA TLFRSQSQVL  780
VSEHKQTENM SNMQKARSDS LKIKAIYGEE RCIFRLQPSW SFQRLKEEIV KRFGIAQDTH  840
VDLKYLDDES EWVLLTCDAD LLECIDVYKS SSNQTVRILV NPSIQPVLGA SFGQTGLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	13	YRRRRP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB03G12460.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK100046	0.0	AK100046.1 Oryza sativa Japonica Group cDNA clone:J013153P10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006651009.2	0.0	PREDICTED: protein NLP1-like
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	J3LJM0	0.0	J3LJM0_ORYBR; Uncharacterized protein
STRING	OB03G12460.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11025	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]