PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G12820.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 345aa    MW: 37271.1 Da    PI: 4.7419
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G12820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.7e-12176218754
                   HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
           HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                   ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  OB03G12820.1 176 MAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 218
                   79*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.129169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-16174247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-13175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.61E-5176223No hitNo description
Gene3DG3DSA:4.10.280.106.1E-16176239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9176218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MELDEESFLD ELMSLRREGA SPWQAAYQGG GGMMMSDLLF YGGEGPEARG GGRVDASPFQ  60
ELVPPMVPPP AAPQHPHEEF NFDCLSEVCN PYRSCALVPS EAASQTQQPT PLRDAMVAEE  120
ETSGDKAPLH GGGSSPPTFM FGGGAGESSE MMAGIRGVGG VHPRSKLHGT PSKNLMAERR  180
RRKRLNDRLS MLRSIVPKIS KMDRTSILGD TIDYVKELTD RIKTLEEEIG ATPEELDLLN  240
TMKDSSSGGN NEMLVRNSTK FDVERRGSGS TRIEICCPAN PGVLLSTVSA LEVLGLEIEQ  300
CVVSCFSDFG MQASCLQDGG KRQVASTDEI KQTLFRSAGY GGRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177184ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G12820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0600290.0AK060029.1 Oryza sativa Japonica Group cDNA clone:006-303-F08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690454.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH61-like
SwissprotQ9LSL12e-64BH093_ARATH; Transcription factor bHLH93
TrEMBLJ3LJQ60.0J3LJQ6_ORYBR; Uncharacterized protein
STRINGOB03G12820.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.19e-67beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]