 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OB03G13590.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
GATA |
| Protein Properties |
Length: 250aa MW: 26503.9 Da PI: 7.0183 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OB03G13590.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 39.8 | 6.3e-13 | 2 | 28 | 8 | 34 |
GATA 8 kTplWRrgpdgnktLCnaCGlyyrkkg 34
+Tp+WR+gp g++tLCnaCG++ r g
OB03G13590.1 2 ETPQWRSGPMGKSTLCNACGVRLRAVG 28
7*********************99765 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0016021 | Cellular Component | integral component of membrane |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 250 aa
Download sequence Send
to blast |
METPQWRSGP MGKSTLCNAC GVRLRAVGTL LDRAAAADMV GDKDAAALAG ELTGDAGASL 60
NGFFDHTGLD AAMVGGGGQG EGEEEEELEW LSNKDAFPSV DTMAAEVEAA AAAPLRALRL 120
DGDAAVEGGA DWAWHAVQRV RRAVQVRAPV PGVPPGEQPH LLPAAALQLP PPRHGDAPRE 180
RGGRLGRHPR QRQGAPRRAG GGAFRRQGQQ VMEQNRRLLP PGGDGGWGRL ACHLLYLLFH 240
FFSIFHFVGH
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC119796 | 1e-109 | AC119796.2 Oryza sativa Japonica Group chromosome 3 clone OJ1172F09, complete sequence. |
| GenBank | AK242735 | 1e-109 | AK242735.1 Oryza sativa Japonica Group cDNA, clone: J090048J08, full insert sequence. |
| GenBank | AP014959 | 1e-109 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012611 | 1e-109 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
