PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G13870.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 219aa    MW: 23518.1 Da    PI: 5.9445
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G13870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000255779123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  y+C  C++ F++   L  H++ H
  OB03G13870.1 57 YECVFCKRGFTTAQALGGHMNIH 79
                  99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.68E-65483No hitNo description
PROSITE profilePS5015710.4715784IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEIGDDKRLM AEIAASSLEQ EVVAAAARRG DDDDVAAVTT TSTSPAAAAA STTRPYYECV  60
FCKRGFTTAQ ALGGHMNIHR RHRGRAKPPG RRDAPTGVTS AVLSRPDVEC YNQNRYLAYS  120
TPPPPPVRPA NPPTGSSFAT YYTGDTAPTV AGVDADCPSL TRELSLFGVA DNSCDHDLCL  180
RLGRVDDGSP HTPEGSPEWL SGELPELDLE LRLGRRPRH
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G13870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2297551e-44AC229755.1 Oryza minuta clone OM__Ba0175J13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651042.11e-148PREDICTED: protein sister of odd and bowel-like
TrEMBLJ3LK111e-158J3LK11_ORYBR; Uncharacterized protein
STRINGOB03G13870.11e-158(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.12e-12C2H2 family protein