PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G14110.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 332aa    MW: 36596.4 Da    PI: 5.8911
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G14110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.63.7e-2776162371
       E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                   +++Lr++++k   ++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  OB03G14110.1  76 GRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpnnsilppdpdnpnaqqyDEKNIRRRVYDALNVLMAMEIISK-DKKEIQWKG 162
                   689*******...*****999************************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.1E-1288332IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.107.0E-4570167IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.0E-3774162IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.6E-2577162IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467857.21E-2077163IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144582.32E-40167270IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440746.28E-41169301No hitNo description
SMARTSM011381.3E-78169330IPR014889Transcription factor DP, C-terminal
PfamPF087816.4E-42170303IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MVSGVAHLPD DXXXXXXXAE APAAAAGAAT STPASENTFL RLNDLDIHGD DAPSSQAPTS  60
KKKKRGARAV GPDKGGRGLR QFSMKVCEKV ESKGRTTYNE VADELVAEFA DPNNSILPPD  120
PDNPNAQQYD EKNIRRRVYD ALNVLMAMEI ISKDKKEIQW KGLPRTSIND IEDLQTELLG  180
LKSRIEKKNA YLQELQDQFV GMQKLIQRNE RLYGSGNIPS GGVALPFILV QTRPHATVEV  240
EISEDMQLVH FDFNSTPFEL HDDSYVLKAM SSCGEQNDGI HDLIPNGGES SSMPNIYRQQ  300
MQQPARATNG TARLPSSPPI PGILKGRVKH EH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-3468167193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G14110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2245890.0AY224589.1 Oryza sativa (japonica cultivar-group) isolate 31182 E2F dimerization factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651049.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-132DPB_ARATH; Transcription factor-like protein DPB
TrEMBLJ3LK350.0J3LK35_ORYBR; Uncharacterized protein
STRINGOB03G14110.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-133Transcription factor DP