PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G15380.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 256aa    MW: 28660.9 Da    PI: 7.3601
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G15380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-18125178356
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                   k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  OB03G15380.1 125 KKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 178
                   4568999**********************************************9 PP
2HD-ZIP_I/II1309.7e-42124215192
   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                   ekkrrl+ eqv++LE++Fe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aLkr++da+++en++L +++++L++e+ 
  OB03G15380.1 124 EKKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVRAENDALLSHNKKLQAEIV 215
                   69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.7E-20116182IPR009057Homeodomain-like
PROSITE profilePS5007117.41120180IPR001356Homeobox domain
SMARTSM003891.2E-17123184IPR001356Homeobox domain
CDDcd000861.12E-15125181No hitNo description
PfamPF000461.2E-15125178IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.5E-19127188IPR009057Homeodomain-like
PRINTSPR000317.5E-6151160IPR000047Helix-turn-helix motif
PROSITE patternPS000270155178IPR017970Homeobox, conserved site
PRINTSPR000317.5E-6160176IPR000047Helix-turn-helix motif
PfamPF021839.2E-14180220IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MASNGMASSP SSFFPPNFLL HMAQQQAAPP PHDPQEQQHH HHHHHHHEQQ QQQHHHHLGV  60
GGPPPHPHNP FLPSPQCPSL QEFRGMAPML GKRPMYGDGG GGGDEVNGGG GEDELSDDGS  120
QAGEKKRRLN VEQVRTLEKN FELGNKLEPE RKMQLARALG LQPRQVAIWF QNRRARWKTK  180
QLEKDYDALK RQLDAVRAEN DALLSHNKKL QAEIVALKGR EAASELINLN KETEASCSNR  240
SENSSEINLD ISRTPP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172180RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G15380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689780.10.0PREDICTED: homeobox-leucine zipper protein HOX21-like
SwissprotA2XD081e-126HOX21_ORYSI; Homeobox-leucine zipper protein HOX21
TrEMBLJ3LKG20.0J3LKG2_ORYBR; Uncharacterized protein
STRINGOB03G15380.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.14e-73HD-ZIP family protein