PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G15490.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 166aa    MW: 18174.6 Da    PI: 11.3238
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G15490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.1e-07931331554
                   HHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS
           HLH  15 riNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 
                   +iN+ +++L+ llP++s+ +++   s +  L++++ YIksL
  OB03G15490.1  93 EINELISKLQALLPESSRSRGTSrSSASKLLKETCSYIKSL 133
                   7**************77555555499999***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.55378133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-892156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-892150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-593133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MWVHPEQRAH GPGQGIPGPL PEGRPEVKAR RKLAGVARRG GVAREFGGGG GCRRSRRRSA  60
YIQEVVSVAG GEWRGGGRIM SSRRGGGRIT DEEINELISK LQALLPESSR SRGTSRSSAS  120
KLLKETCSYI KSLHREVDDL SDRLSELMST MDNNSPQAEI IRSLLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G15490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2416741e-107AK241674.1 Oryza sativa Japonica Group cDNA, clone: J065192H12, full insert sequence.
GenBankCT8350951e-107CT835095.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA013L16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649478.11e-53PREDICTED: transcription factor ILI3
TrEMBLJ3LKH31e-113J3LKH3_ORYBR; Uncharacterized protein
STRINGOB03G15490.11e-114(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.14e-23bHLH family protein