PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G16120.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 315aa    MW: 34451.1 Da    PI: 7.2995
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G16120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.7e-16160199245
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAaka 45 
                   +++G+r+++ +g+W+AeIrdp     + +r++lg+f t+eeAa+a
  OB03G16120.1 160 HFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFNTPEEAARA 199
                   69*******.**********72....35***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.6E-22159199IPR001471AP2/ERF domain
SMARTSM003802.1E-18160210IPR001471AP2/ERF domain
PfamPF008475.9E-10160199IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-15160200IPR016177DNA-binding domain
PROSITE profilePS5103217.359160199IPR001471AP2/ERF domain
CDDcd000182.96E-20160199No hitNo description
PRINTSPR003674.0E-11161172IPR001471AP2/ERF domain
PRINTSPR003674.0E-11183199IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MFPSHPLTHP QAWRLQMYIF SLPRWQRTTN SQKKRDEHDK KRSKRSGRPK PRAMCGGAIL  60
AEFIPPQAGA PASKRVTAGH LWPAGAKNGG GKSKKKSFAE ADDFEAAFEQ FHDDSDFDDA  120
EEDDDGGLFG SRSLVFTSKS PAHDGRAARA ASKKKRGRRH FRGIRQRPWG KWAAEIRDPH  180
KGTRVWLGTF NTPEEAARAL VDLTTAPAPV VAPPPLMASS FTDSATSESG GSPSKKPRAD  240
DASSEGSVGG SSSDTLGFTD ELEFDPFLLF QLPFSDGYES IDSLFTGGDA VQDANSANND  300
MNSVNLWSFD EFPLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-13159199445ATERF1
3gcc_A4e-13159199445ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G16120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2297404e-76AC229740.1 Oryza minuta clone OM__Ba0228D20, complete sequence.
GenBankAC2297614e-76AC229761.1 Oryza minuta clone OM__Ba0159K04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649510.21e-158PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLJ3LKN60.0J3LKN6_ORYBR; Uncharacterized protein
STRINGOB03G16120.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79873040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.11e-13ERF family protein