PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G16290.1
Common NameLOC102714354
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 235aa    MW: 26269.1 Da    PI: 10.0027
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G16290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3543e-17135225199
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   f+k +++s+v +  +l lp++f+e++  + +++  +tl de+ ++++ ++    ++++  l++GW +F+ ++gL +gD  vF+l++ ++f  +v+++
  OB03G16290.1 135 FVKPMLHSHVVRGFWLGLPRHFCETYL-P-KRDAIVTLVDEKDEEFDTNY--LAYKNG--LSGGWAGFALDHGLLDGDATVFQLIKPTTF--KVHII 223
                   89************************4.3.36679***************..566555..9***********************986777..99999 PP

                   -S CS
            B3  98 rk 99 
                   r+
  OB03G16290.1 224 RA 225
                   86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-20126226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-24128225IPR015300DNA-binding pseudobarrel domain
CDDcd100173.06E-26133224No hitNo description
PfamPF023621.1E-15135225IPR003340B3 DNA binding domain
PROSITE profilePS5086311.829135226IPR003340B3 DNA binding domain
SMARTSM010195.4E-19135226IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MAIDKGMSPY EAARERTVEE NKRKMEALNL RHLSAALALA PKTPSPMKQK RRRIVEAAAV  60
APSPPRRSRR LANLPEVKYA EGASNGSERM KRSPRKPIDS IYLATRGSIS MEARLEAARK  120
AEELESQLDP EFPSFVKPML HSHVVRGFWL GLPRHFCETY LPKRDAIVTL VDEKDEEFDT  180
NYLAYKNGLS GGWAGFALDH GLLDGDATVF QLIKPTTFKV HIIRATVGDG NEATK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14953KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G16290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1220170.0AK122017.1 Oryza sativa Japonica Group cDNA clone:J033111M07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649518.11e-174PREDICTED: B3 domain-containing protein Os03g0184500 isoform X1
SwissprotQ10QS91e-161Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBLJ3LKQ31e-172J3LKQ3_ORYBR; Uncharacterized protein
STRINGOB03G16290.11e-173(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-48B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]