PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G16590.1
Common NameLOC102717325
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 328aa    MW: 35411.1 Da    PI: 6.261
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G16590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.43.4e-15110161155
                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  OB03G16590.1 110 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYVKELE 161
                   79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.03E-13108165No hitNo description
PROSITE profilePS5088816.177109160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-14110176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-17110175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-12110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-11115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MALEAVVFPQ GHFGYGCGRD SPAYGMPWCD VLGGGGGGGF GEFCGVDEWD DQLRVASVDE  60
WDVVSKDHSD ASTEGKAPAP APERAAPVAA GRRKRRRTKV IKNKEEIECQ RMTHIAVERN  120
RRRQMNEYLA VLRSLMPPSY AQRGDQASIV GGAINYVKEL EQLLQSLEVQ KSLKNRTAGM  180
DAGEDSPFSG FFSFPQYCTS SRSGCSSASA GSSGNASSVV MDDTAGSAER VRPAAIADIE  240
VTMVEGHASL KVLARRRPKQ LLKLVVGLQQ LRIPPLHLNV TTVDAMVLYS FSLKVEDDSK  300
LGSVEDIATA VHEILGSIQQ QEAVLPIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19296RKRRR
29297RKRRRT
3110121RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G16590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1075550.0AK107555.1 Oryza sativa Japonica Group cDNA clone:002-130-B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649528.10.0PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T44e-84BH096_ARATH; Transcription factor bHLH96
TrEMBLJ3LKT30.0J3LKT3_ORYBR; Uncharacterized protein
STRINGOB03G16590.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]