PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G16800.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 284aa    MW: 30947 Da    PI: 4.3305
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G16800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.4e-161101521156
           AP2  11 krgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                    +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ +l+ge
  OB03G16800.1 110 HWGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDSAAFRLRGE 152
                   5**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.00674159IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-18109160IPR016177DNA-binding domain
PfamPF008471.6E-10110152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-26110160IPR001471AP2/ERF domain
SMARTSM003803.5E-28110165IPR001471AP2/ERF domain
CDDcd000183.03E-29110161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MATSTVDWCG RGSNLPAALY DMVDSKELVG ALPPSMVSFS YPCSDNVEQS GSSLLAGANY  60
LTPAQVFQFH VQSQLXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXH WGKWVAEIRL  120
PRNRTRLWLG TFDTAEEAAL AYDSAAFRLR GESARLNFPE LRLGGAHLGP PLHAAVDAKL  180
HAICHGMDLP QSQSNATTTT TTPTTATTPS SFLSSESPDI KSEPVCSGSE SSSSADGDVS  240
STGSSDVVPE MQLLDFSEAP WDESESFLLR KYPSLEIDWD AILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-161111591160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G16800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1166040.0AC116604.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0019D17, from chromosome 3, complete sequence.
GenBankAC2191850.0AC219185.1 Oryza officinalis clone OO__Ba0118D01, complete sequence.
GenBankAK2412430.0AK241243.1 Oryza sativa Japonica Group cDNA, clone: J065128M14, full insert sequence.
GenBankAK2876940.0AK287694.1 Oryza sativa Japonica Group cDNA, clone: J065128M14, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689795.11e-155PREDICTED: ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E43e-47RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLJ3LKV41e-176J3LKV4_ORYBR; Uncharacterized protein
STRINGOB03G16800.11e-177(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.18e-36related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]