PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G16920.1
Common NameLOC102721814
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 538aa    MW: 60193.6 Da    PI: 6.1659
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G16920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS416.62.2e-1271705382374
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   ++++++c +av++ +    + l+++l++++s +g+pmqRl ay++e+L arl+++++ lyk+l+++e +   s e +++++l++e++P++kf+++ a
  OB03G16920.1 170 KQVIVACGKAVDE-NGWYRDLLISELRNMVSISGEPMQRLGAYMLEGLVARLSSTGHALYKSLKCKEPT---SLELMSYMHLLYEICPFFKFGYMSA 262
                   6788889998887.445567899*********************************************9...9************************ PP

          GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                   N aI eav+ge+ vHiiDf+i qG QW++++qaLa+Rp+gpp lRiTg+++++s   +   l  +g+rL ++A+++g+pfefn+ v    +++ le+
  OB03G16920.1 263 NGAIAEAVKGENFVHIIDFQIAQGSQWATMIQALAARPGGPPYLRITGIDDSNSAhaRGGGLDIVGRRLFNIAQSCGLPFEFNA-VPAGSHEVMLEH 358
                   ***************************************************8888889999***********************.7999999***** PP

          GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                   L++++gE+++Vn+++qlh+++desv +e++rd++L++vk+lsP+vv++veqea++n+++F++r le+l+yy+a+f+++++  pr++++ri+ E++++
  OB03G16920.1 359 LDIRSGEVIVVNFAYQLHHTPDESVGVENHRDRILRMVKGLSPRVVTLVEQEANTNTAPFFNRYLETLDYYTAMFEAIDVACPRNDKKRISTEQHCV 455
                   ************************************************************************************************* PP

          GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   +r+ivn++acegaer+erhe ++kWr+rl +aGF+p+pls  +++++k ll  ++s  y++ee++g l+lgWk+r+Lv+ SaWr
  OB03G16920.1 456 ARDIVNLIACEGAERVERHEPFGKWRSRLAMAGFRPYPLSALVNSTIKKLLDSYHSY-YKLEERDGVLYLGWKNRRLVVSSAWR 538
                   *******************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.989143519IPR005202Transcription factor GRAS
PfamPF035147.6E-125170538IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MSMQASNRPY RYEDNSQIPY YSQSSMNVGR NGTYCVQQNH EDLYVSSDDG SQNSNPKAQV  60
LQAQYCTLDS SSGNFVYPAH SSTSSQSQYI SGSPISQQDS HSEHTSGSPV SASCVTEVPG  120
LRFTTIEEIE NAMFGPEPDT VSSDCSLLTD SAFYQDNWRE HLGINTRDLK QVIVACGKAV  180
DENGWYRDLL ISELRNMVSI SGEPMQRLGA YMLEGLVARL SSTGHALYKS LKCKEPTSLE  240
LMSYMHLLYE ICPFFKFGYM SANGAIAEAV KGENFVHIID FQIAQGSQWA TMIQALAARP  300
GGPPYLRITG IDDSNSAHAR GGGLDIVGRR LFNIAQSCGL PFEFNAVPAG SHEVMLEHLD  360
IRSGEVIVVN FAYQLHHTPD ESVGVENHRD RILRMVKGLS PRVVTLVEQE ANTNTAPFFN  420
RYLETLDYYT AMFEAIDVAC PRNDKKRIST EQHCVARDIV NLIACEGAER VERHEPFGKW  480
RSRLAMAGFR PYPLSALVNS TIKKLLDSYH SYYKLEERDG VLYLGWKNRR LVVSSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-581715386375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G16920.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2297540.0AC229754.2 Oryza minuta clone OM__Ba0173L20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649543.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_006649544.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_015690825.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLJ3LKW60.0J3LKW6_ORYBR; Uncharacterized protein
STRINGOB03G16920.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]