PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G19910.1
Common NameLOC102714166
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 247aa    MW: 27240.7 Da    PI: 5.1794
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G19910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-161962448
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     W++eEde+l + v+q   ++W  Ia+ ++ gRt+k+c++rw+++l
     OB03G19910.1 19 WSKEEDERLREMVRQNKAKDWGVIAAAFP-GRTDKSCRLRWRQHL 62
                     *****************************.************996 PP
2Myb_DNA-binding45.41.8e-1469113248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +++T++Ed  +v++   + ++ W+tIa+ ++ gR+++ +k+rw+++l
     OB03G19910.1  69 QPFTPDEDRTIVELQLVHRNR-WSTIAAFLP-GRSDNAVKNRWNTHL 113
                      79*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.6931166IPR017930Myb domain
SuperFamilySSF466892.61E-2813109IPR009057Homeodomain-like
SMARTSM007171.0E-151564IPR001005SANT/Myb domain
PfamPF002494.8E-151962IPR001005SANT/Myb domain
CDDcd001671.18E-151962No hitNo description
Gene3DG3DSA:1.10.10.603.4E-221970IPR009057Homeodomain-like
SMARTSM007174.0E-1267115IPR001005SANT/Myb domain
PROSITE profilePS5129417.3369117IPR017930Myb domain
PfamPF002491.5E-1269113IPR001005SANT/Myb domain
CDDcd001671.99E-1170113No hitNo description
Gene3DG3DSA:1.10.10.603.2E-2071116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MALEGEGEGG GPPAKKAGWS KEEDERLREM VRQNKAKDWG VIAAAFPGRT DKSCRLRWRQ  60
HLDPSVDAQP FTPDEDRTIV ELQLVHRNRW STIAAFLPGR SDNAVKNRWN THLRKRRAQD  120
DGQQQQQQPL ERAPACLPLF PLTPGFHHST VRPMPVGENA PGPERSALPE CLELFPLSLG  180
DVMDNATGAA AMYVDTDGIC SLTEMRLSPP AGDVDIGAVC SPPDTESRLA PATVVFDAMP  240
LQAFWVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28101161107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G19910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1376961e-108AC137696.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0049C20, from chromosome 3, complete sequence.
GenBankAP0149591e-108AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651200.10.0PREDICTED: transcriptional activator Myb-like
TrEMBLJ3LLR50.0J3LLR5_ORYBR; Uncharacterized protein
STRINGOB03G19910.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49603465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.12e-32myb domain protein 77