PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G19990.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 218aa    MW: 21975.9 Da    PI: 11.5277
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G19990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.53e-0782104123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   y+C++Cg+ F r  nL+ H r+H
  OB03G19990.1  82 YVCEICGQGFQREQNLQMHRRRH 104
                   9*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.05E-579105No hitNo description
Gene3DG3DSA:3.30.160.605.8E-681104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556.5E-482104IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.75982104IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MALVKSHHQM LASSSTSSSS PSSQQQPAPA LPPSNSSCVA AAPAAADQPS PVKRKRRPPG  60
TPDPDAEVVA LSPRTLLESD RYVCEICGQG FQREQNLQMH RRRHKVPWRL VKRPAAAGGE  120
EGGAAGGGAA GGGGGGGGGG QAHCHRRRXX XXXXXPGART AAGVSGCAPA APRATPSSPT  180
TRPTSRPAAP AATPATAAAS SPGTPPPSPS LLLRAMDT
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G19990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8376981e-114CT837698.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA005P05, full insert sequence.
GenBankJQ6815281e-114JQ681528.1 Oryza sativa Indica Group cultivar Zhongxian3037 LPA1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690642.12e-94PREDICTED: LOW QUALITY PROTEIN: protein SHOOT GRAVITROPISM 5-like, partial
TrEMBLJ3LLS31e-141J3LLS3_ORYBR; Uncharacterized protein
STRINGOB03G19990.11e-142(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-34C2H2-like zinc finger protein