PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G20240.1
Common NameLOC102722376
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 753aa    MW: 82636.3 Da    PI: 6.1177
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G20240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.8e-084385347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT +E++ + +a +q G++ +++I  +++  +   q++++++ +
     OB03G20240.1 43 AWTRQEEQNFFNALRQVGKN-FEKITLRVQ-SKNKDQVRHYYYRL 85
                     6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.64E-93489IPR009057Homeodomain-like
PROSITE profilePS5129312.5843990IPR017884SANT domain
SMARTSM007173.0E-64088IPR001005SANT/Myb domain
PfamPF002493.6E-64385IPR001005SANT/Myb domain
CDDcd001675.73E-64386No hitNo description
Gene3DG3DSA:1.10.10.605.2E-54392IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MEVEAREETI PPPPPVDFPA PAPLPASDPN QKTVRKPTRQ WAAWTRQEEQ NFFNALRQVG  60
KNFEKITLRV QSKNKDQVRH YYYRLVRRMK KLLGPEFSLD AKNSKDTIAA MLRWWSLLEK  120
FSCSASKLHL KPRRFKTFVE ALGNQLLKDR NKTRRKCPRG DVCLSSSSSV LNRTPGNESF  180
SVKFLPVDVS NGSKVASSKG AFFKKVAESN CNNKSGATKG DLSATRTVKQ KRRAGGGVAS  240
AAYKKWERAA MAGVSLVADA AEELERNTVS VDARMLSPSS SNVCTADDHI KEALSQNHIK  300
EADQQAPAKL KLQLFPINDA TRKALEKGEH NPHLELTLSA RKKISSVLEH LNRKWGNSSI  360
ASGELLLFPY CAHQEDLATY QRWTTKDNVA VADVFLSVNS PSVFRLRYGW FSLAELEAGV  420
SEISLTHFEN CLIPEDIHAK SPSEACVQKD GTSLGSCVRE QHPCNSKDQS ALLLAMSSST  480
GKSAEVPEQS TDVTSSQLGR QKHDQVTTNQ VFEADPGMDC TAVSEGEWAD TLTDISVGYL  540
LTEASRGANT DCPGTSIAKN ALFLENPCSY DSFDAAVALH ASRYKAAEQP ALASHSTIWG  600
AEETCDEFSF SVASSRKQEG SNNSASSSPD SDCDVHPSNS EGFQGFLQDL AGADVADNPC  660
IDDAKDLEAL CAESPPRSDN DSTLKDQSLA DLYWPDSLGP LDLEIPSATY HADDLLLGDS  720
QNSWNRIMAN SLDAFRNLSF FTTEKNDSIP SIM
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G20240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1026880.0AK102688.1 Oryza sativa Japonica Group cDNA clone:J033102O16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649712.10.0PREDICTED: TSL-kinase interacting protein 1
RefseqXP_015690960.10.0PREDICTED: TSL-kinase interacting protein 1
TrEMBLJ3LLU80.0J3LLU8_ORYBR; Uncharacterized protein
STRINGOB03G20240.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54783643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.21e-166TSL-kinase interacting protein 1