PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB03G21490.1

Common Name

LOC102718811

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 413aa MW: 43639.4 Da PI: 4.8221

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB03G21490.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.1	1.5e-13	207	253	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L ++++++k+L OB03G21490.1 207 KSHSEAERRRRERINAHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 253 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.022	204	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.7E-11	207	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-15	208	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-15	208	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-13	210	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.26E-5	217	256	No hit	No description
Gene3D	G3DSA:3.30.70.260	1.6E-4	291	340	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MGAHGDDHHH HHHHQEAGVL VDEEEEEEEE EEIEQDCGGP TSGVVEQEIG GDGGGGCHDA 60 AGMVFEATSS VGSVSATMGP PPIMCWPQPA QPVHGAIHGH HNLGGGGGGQ QSPFFPLLPP 120 LPPQPPPPPP FFADFYARRA LQYAYDHSGG ASSSSDPLGL GGLYMGQHGS HVAGMMMTPP 180 FAPSPFGDLG RMTAQEIMDA KALAASKSHS EAERRRRERI NAHLARLRSL LPNTTKTDKA 240 SLLAEVIQHV KELKRQTSEI TEEACPLPTE SDELTVDASS DEDGRLVVRA SLCCDDRTDL 300 LPDLIRALKA LRLRALKAEI TTLGGRVKNV LVVTGDDSAA CAGADGDGEQ QEEDAMQAPM 360 SPQHTVASIQ DALRAVMERT TSATEEPGGS GAGGGGKRQR TTSLSAILEN RSI

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MGAHGDDHHH HHHHQEAGVL VDEEEEEEEE EEIEQDCGGP TSGVVEQEIG GDGGGGCHDA  60
AGMVFEATSS VGSVSATMGP PPIMCWPQPA QPVHGAIHGH HNLGGGGGGQ QSPFFPLLPP  120
LPPQPPPPPP FFADFYARRA LQYAYDHSGG ASSSSDPLGL GGLYMGQHGS HVAGMMMTPP  180
FAPSPFGDLG RMTAQEIMDA KALAASKSHS EAERRRRERI NAHLARLRSL LPNTTKTDKA  240
SLLAEVIQHV KELKRQTSEI TEEACPLPTE SDELTVDASS DEDGRLVVRA SLCCDDRTDL  300
LPDLIRALKA LRLRALKAEI TTLGGRVKNV LVVTGDDSAA CAGADGDGEQ QEEDAMQAPM  360
SPQHTVASIQ DALRAVMERT TSATEEPGGS GAGGGGKRQR TTSLSAILEN RSI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	212	217	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB03G21490.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK106649	0.0	AK106649.1 Oryza sativa Japonica Group cDNA clone:002-113-F07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006649780.1	0.0	PREDICTED: transcription factor bHLH30-like
Swissprot	Q9S7Y1	6e-75	BH030_ARATH; Transcription factor bHLH30
TrEMBL	J3LM73	0.0	J3LM73_ORYBR; Uncharacterized protein
STRING	OB03G21490.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1918	38	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	2e-56	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	102718811

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]