PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G21640.1
Common NameLOC102721625
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 254aa    MW: 25711.5 Da    PI: 4.8669
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G21640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91e-174796255
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                   ykGVr ++ +g+Wv+eIr p     +  +r++lg++ t+e Aa+a++aa  +l+g
  OB03G21640.1 47 PYKGVRMRS-WGSWVSEIRAP-----HqkRRIWLGSYATPEAAARAYDAALICLKG 96
                  59****998.**********7.....335************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575120No hitNo description
SMARTSM003802.1E-3547110IPR001471AP2/ERF domain
PROSITE profilePS5103221.79947104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-2947106IPR001471AP2/ERF domain
PRINTSPR003675.9E-84859IPR001471AP2/ERF domain
CDDcd000188.95E-1848103No hitNo description
SuperFamilySSF541711.31E-1948105IPR016177DNA-binding domain
PfamPF008478.4E-114896IPR001471AP2/ERF domain
PRINTSPR003675.9E-87086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MVKNPSSKCG IAAGGGAASC SGGGGGGGGD GKRMVTEATA AALAVRPYKG VRMRSWGSWV  60
SEIRAPHQKR RIWLGSYATP EAAARAYDAA LICLKGPDAV LNFPSSSSSS PSRLLDSCRD  120
TGSAAGDMSP RSIQRVAAAA AAAFDAGVIG SVVADNSCSS SADATSTPTS ATTSLSTLGS  180
AGGDVLDHAT PSSSSAAANA CSPQLDGDHE LWTELDAFAS PKFMDLIAAG GTPFSLPWEE  240
PEEDGELMRL WSFC
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00156DAPTransfer from AT1G21910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G21640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1352060.0AC135206.3 Oryza sativa Japonica Group chromosome 3 clone OJ1041F02, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649790.10.0PREDICTED: ethylene-responsive transcription factor ERF014
TrEMBLJ3LM881e-180J3LM88_ORYBR; Uncharacterized protein
STRINGOB03G21640.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108303040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.11e-33ERF family protein