PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G22680.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 242aa    MW: 25809.7 Da    PI: 10.2087
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G22680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.90.00011251631154
                   HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   +R +++ +++  L++l+ +      +K + a++L++A  +I++L
  OB03G22680.1 125 KRSQKLGDKITALQQLVSPY-----GKTDTASVLQEAAACIRQL 163
                   6889999**********999.....9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.775114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.30E-4125168No hitNo description
SuperFamilySSF474591.57E-8125173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-5125171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MLAADYELFN HLSFSPSPQN LQSPTFFTTR SSDSYLGESS MYGAGARPAF AQFSYAQPTD  60
ATSAAHLVRW TAAGERTTGD SGGGGFRGSK RLKTTAPTAA TTQGPRHGLN CHAKPRNQPA  120
KATCKRSQKL GDKITALQQL VSPYGKTDTA SVLQEAAACI RQLHHQIQIL TAPYPPGTRS  180
SSAPSQQDAG GEGTTTELRR RGLCVAAVSP AIVSLVAEGA AGHGHRRTDV EENQRRIWFG  240
NR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G22680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690670.11e-179PREDICTED: uncharacterized protein LOC102708511
TrEMBLJ3LMJ21e-178J3LMJ2_ORYBR; Uncharacterized protein
STRINGOB03G22680.11e-179(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37582426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.17e-22bHLH family protein