PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G24880.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 202aa    MW: 21939.6 Da    PI: 8.8205
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G24880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.52.5e-162576155
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  s y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a++k++g
  OB03G24880.1 25 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAALKFRG 76
                  57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.77E-132586No hitNo description
SuperFamilySSF541712.03E-182585IPR016177DNA-binding domain
PfamPF008476.7E-112576IPR001471AP2/ERF domain
PROSITE profilePS5103219.3612684IPR001471AP2/ERF domain
SMARTSM003805.5E-332690IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-192684IPR001471AP2/ERF domain
PRINTSPR003676.0E-52738IPR001471AP2/ERF domain
PRINTSPR003676.0E-56686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MQNMSKQELV ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFATE  60
EEAAEAYDIA ALKFRGVNAV TNFEPSRYNL EAISQSDLPI SISGRRQNSS NKPAPEAEGH  120
ITLSSPPISQ QSSNSGSAAP CLLHNLLQFQ PCGPPQALPL PGYSYAEPGF CWPFGDGEQK  180
VQLNSKVEMA NGFLLHLGNA AN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G24880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1098391e-142AK109839.1 Oryza sativa Japonica Group cDNA clone:002-148-D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651322.11e-148PREDICTED: AP2-like ethylene-responsive transcription factor AIL7, partial
SwissprotQ8L3U31e-53BBM1_BRANA; AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8LSN29e-54BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLJ3LN621e-148J3LN62_ORYBR; Uncharacterized protein
STRINGOB03G24880.11e-149(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135792631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.17e-45AP2 family protein