PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G25460.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family EIL
Protein Properties Length: 620aa    MW: 69016.1 Da    PI: 7.9829
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G25460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3258.63e-7911617167
                   XXXXXXXXXXXXXXXXX..XXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
          EIN3   7 mwkdqmllkrlkerkkqlledkeaa.tgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkekvefd 102
                   mw+d+m+lkrlke ++++ +d      + +k ++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gasd+Lr+WWkekv+fd
  OB03G25460.1   1 MWRDRMKLKRLKELQQSRGKDPAGGgGDLSKPRQSQEQARRKKMSRAQDGILKYMLKMMEVCRAQGFVYGIIPEKGKPVSGASDNLRGWWKEKVRFD 97 
                   9***************98865555478899******************************************************************* PP

                   XXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT- CS
          EIN3 103 rngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekg 167
                   rngpaai+kyqa+n++++ es+l + ++ ++hsl+elqDTtlgSLLsalmqhcdppqrr p  +g
  OB03G25460.1  98 RNGPAAIAKYQADNAVPGCESELAS-GTGSPHSLQELQDTTLGSLLSALMQHCDPPQRRGPPRAG 161
                   ***********************66.*********************************987776 PP
2EIN3176.92.1e-54238444179354
                   HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX.....XXXXX CS
          EIN3 179 lwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss.....slrkq 270
                   +ww++lg++kdqg+ppykkphdlkkawkvsvLtavikhmsp+ie+ir+l+rqsk+lqdkm+ake  ++l+v++qee+++ ++++  +         +
  OB03G25460.1 238 EWWPALGIPKDQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIEKIRRLVRQSKCLQDKMTAKEISTWLAVVKQEEELFLKLHPGARppvpsGGIAS 334
                   7***********************************************************************************9444454322235 PP

                   XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX............................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XX CS
          EIN3 271 spkvtlsceqkedvegkkeskikhvqavktta............................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgset 339
                   + ++++s++ ++dv++ ++ k  ++ ++k+                              ++++++kr ++ +e++ + +++v +tc++ q+++s++
  OB03G25460.1 335 AISFNASSS-EYDVDVVDDCKGDEAGNQKAVVsdpsafnlgaailsdkflmpatmkeettDVEFIQKRSAPGAEPELMLNNRV-YTCNNVQCPHSDY 429
                   556665555.99***8888887888888887789999*****************************************99976.************* PP

                   XXXXXXXXXXXXXXX CS
          EIN3 340 elifadknsisqney 354
                     +f d+n++++++y
  OB03G25460.1 430 GYGFLDRNARNSHQY 444
                   *************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048733.3E-751157No hitNo description
Gene3DG3DSA:1.10.3180.101.2E-12123159IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167685.49E-10127159IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene3DG3DSA:1.10.3180.109.7E-41238321IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.96E-32238316IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
PfamPF048732.1E-32238313No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MWRDRMKLKR LKELQQSRGK DPAGGGGDLS KPRQSQEQAR RKKMSRAQDG ILKYMLKMME  60
VCRAQGFVYG IIPEKGKPVS GASDNLRGWW KEKVRFDRNG PAAIAKYQAD NAVPGCESEL  120
ASGTGSPHSL QELQDTTLGS LLSALMQHCD PPQRRGPPRA GXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXGEWW  240
PALGIPKDQG PPPYKKPHDL KKAWKVSVLT AVIKHMSPDI EKIRRLVRQS KCLQDKMTAK  300
EISTWLAVVK QEEELFLKLH PGARPPVPSG GIASAISFNA SSSEYDVDVV DDCKGDEAGN  360
QKAVVSDPSA FNLGAAILSD KFLMPATMKE ETTDVEFIQK RSAPGAEPEL MLNNRVYTCN  420
NVQCPHSDYG YGFLDRNARN SHQYTCKYND PLQQSTENKP SPPAIFPATY NTPNQALNNL  480
DFGLPVDGQR SITELMNMYD SNFVANKSLS NDSATIMERP NAANPRMQMD DGFFGQGSAI  540
GGSSGGVFDD VNGMMQQQQQ TTPVQQQFFI RDDTAFGNQM GEISGASEFR FGSGFNMSGA  600
VDYPGAVQGQ QKNDGSNWYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A4e-3923832149132Protein ETHYLENE INSENSITIVE 3
4zds_B4e-3923832149132Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator in the ethylene response pathway (PubMed:16786297, PubMed:28829777, PubMed:27701783, PubMed:25995326). Required for the inhibition of root growth by ethylene in etiolated seedlings (PubMed:25995326, PubMed:28829777). Functions upstream of the auxin biosynthetic gene YUCCA8 and directly activates its expression (PubMed:28829777). Functions downstream of the ethylene signaling factor EIN2 in disease resistance against the rice blast fungus (Magnaporthe oryzae) (PubMed:27701783). Binds directly to the promoters of the NADPH oxidases RBOHA and RBOHB, and the jasmonate biosynthetic gene OPR4 to activate their expression during fungal infection (PubMed:27701783). May enhance disease resistance by facilitating reactive oxygen species (ROS) generation and jasmonate biosynthesis with subsequent phytoalexin accumulation during Magnaporthe oryzae infection (PubMed:27701783). Acts as negative regulator of salt tolerance (PubMed:25995326). During salt stress, activates the cation transporter HKT1, which mediates increased sodium uptake in roots, and contributes to sodium accumulation and salt toxicity (PubMed:25995326). Binds directly to the DNA sequence 5'-TGTTACAAATACC-3' in the promoter of the GA20OX2 gene to activate its expression at the transcriptional level during ethylene signaling (PubMed:30002253). Possesses transactivation activity in protoplasts (PubMed:25995326). {ECO:0000269|PubMed:16786297, ECO:0000269|PubMed:25995326, ECO:0000269|PubMed:27701783, ECO:0000269|PubMed:28829777, ECO:0000269|PubMed:30002253}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G25460.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:27701783}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650014.10.0PREDICTED: LOW QUALITY PROTEIN: ETHYLENE INSENSITIVE 3-like 1 protein
SwissprotQ10M410.0EIL1A_ORYSJ; Protein ETHYLENE-INSENSITIVE 3-like 1a
TrEMBLJ3LNC00.0J3LNC0_ORYBR; Uncharacterized protein
STRINGOB03G25460.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27050.11e-69ETHYLENE-INSENSITIVE3-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang C, et al.
    MAOHUZI6/ETHYLENE INSENSITIVE3-LIKE1 and ETHYLENE INSENSITIVE3-LIKE2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.
    Plant Physiol., 2015. 169(1): p. 148-65
    [PMID:25995326]
  3. Yang C, et al.
    Activation of ethylene signaling pathways enhances disease resistance by regulating ROS and phytoalexin production in rice.
    Plant J., 2017. 89(2): p. 338-353
    [PMID:27701783]
  4. Qin H, et al.
    The activation of OsEIL1 on YUC8 transcription and auxin biosynthesis is required for ethylene-inhibited root elongation in rice early seedling development.
    PLoS Genet., 2017. 13(8): p. e1006955
    [PMID:28829777]
  5. Kuroha T, et al.
    Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding.
    Science, 2018. 361(6398): p. 181-186
    [PMID:30002253]