PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G25560.1
Common NameLOC102714816
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 355aa    MW: 39641 Da    PI: 8.0629
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G25560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like109.71.5e-3447101155
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   kprl+WtpeLHerFveav+qLGG+ekAtPkti++lm+v+gLtl+h+kSHLQkYRl
  OB03G25560.1  47 KPRLKWTPELHERFVEAVNQLGGPEKATPKTIMRLMGVPGLTLYHLKSHLQKYRL 101
                   79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.87444104IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.5E-3345102IPR009057Homeodomain-like
SuperFamilySSF466896.45E-1846102IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-2447102IPR006447Myb domain, plants
PfamPF002499.1E-1149100IPR001005SANT/Myb domain
PfamPF143793.3E-25149195IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MYHQQQQIQN HSQLLSSRQS FPSERHLLMQ GGSVPGESGL VLSTDAKPRL KWTPELHERF  60
VEAVNQLGGP EKATPKTIMR LMGVPGLTLY HLKSHLQKYR LSKNLHAQAN VGNVKNALVC  120
TTATEKPSEG NRSPVSHLTL GTQTNKSVHI GEALQMQIEV QRRLHEQLEV QRHLQLRIEA  180
QGKYLQSVLE KAQETLAKQN AGSVGLETAK MELSELVSKV STECLQHAFS GFEEIESSQM  240
LQGHTMHLGD GSVDSCLTVC DGSQKDQDIL SISLSAQKGK EIGCMSFDMH VKERGSEDLF  300
LNKLSRRPSN HQERCERRDG FSMSCQATKL DLNMNDTYGG PKHCKKFDLN GFSWA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-2146103158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-2146103158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-2147103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-2147103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-2147103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-2147103157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-2146103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-2146103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-2146103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-2146103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-2146103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-2146103158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G25560.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1002820.0AK100282.1 Oryza sativa Japonica Group cDNA clone:J023074M06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650017.10.0PREDICTED: myb family transcription factor APL-like
SwissprotQ9SQQ91e-106PHL9_ARATH; Myb-related protein 2
TrEMBLJ3LND00.0J3LND0_ORYBR; Uncharacterized protein
STRINGOB03G25560.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35743879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-105G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]