PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB03G25750.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 436aa MW: 45605.2 Da PI: 8.335

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB03G25750.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.6	8.9e-08	217	237	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ++ar G+Ck G++C+F Hg OB03G25750.1 217 PCLYYAR-GFCKNGSSCRFVHG 237 8****.***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.723	212	239	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0028	214	238	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.45E-5	215	237	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.8E-5	216	237	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.8E-5	217	237	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MDAYEATKVV FSRIQALDPD HAAKIMGFLL IQDHGDKEMI RLAFGPEALL QSVIAQARKD 60 LALLPASSPT VSAAGHAPFL LSRQSSGRGA APALPATSPS SWAQAQPFSR SNSMSNGAAD 120 ELLCAGEELS PVNSAGVAAA APPFFPRGGD SLLDDFQLQE QLAFLHEGAG GVNPGHALPV 180 FDGAECWPSG GPGHRRSASV NELFLGGGGG DAFGWKPCLY YARGFCKNGS SCRFVHGGLS 240 DDFAVAGMDA AAAEQQQCQD FLPRSKSQHL GPAAFPFSPT GPLPGSPSAT SKCLSLLLQQ 300 QHNDNQRAAA AAMMLGGGGG GHGGAQVHGS AASGPRRLRQ HDEPRIAPDL PHLPGRQHVP 360 RGGRLQLLQH LRAGARRAHS VPAEAHVRVR HLRVPRDGEA DLGQGQPAFH LRRPRARQAL 420 QGEGQGPGQV QEAAAR

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MDAYEATKVV FSRIQALDPD HAAKIMGFLL IQDHGDKEMI RLAFGPEALL QSVIAQARKD  60
LALLPASSPT VSAAGHAPFL LSRQSSGRGA APALPATSPS SWAQAQPFSR SNSMSNGAAD  120
ELLCAGEELS PVNSAGVAAA APPFFPRGGD SLLDDFQLQE QLAFLHEGAG GVNPGHALPV  180
FDGAECWPSG GPGHRRSASV NELFLGGGGG DAFGWKPCLY YARGFCKNGS SCRFVHGGLS  240
DDFAVAGMDA AAAEQQQCQD FLPRSKSQHL GPAAFPFSPT GPLPGSPSAT SKCLSLLLQQ  300
QHNDNQRAAA AAMMLGGGGG GHGGAQVHGS AASGPRRLRQ HDEPRIAPDL PHLPGRQHVP  360
RGGRLQLLQH LRAGARRAHS VPAEAHVRVR HLRVPRDGEA DLGQGQPAFH LRRPRARQAL  420
QGEGQGPGQV QEAAAR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB03G25750.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102918	0.0	AK102918.1 Oryza sativa Japonica Group cDNA clone:J033114B10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006650026.1	0.0	PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 23-like
Swissprot	Q10LZ9	1e-153	C3H23_ORYSJ; Zinc finger CCCH domain-containing protein 23
TrEMBL	J3LNE9	0.0	J3LNE9_ORYBR; Uncharacterized protein
STRING	OB03G25750.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1433	11	15

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]