PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G26140.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 272aa    MW: 27832.1 Da    PI: 5.2908
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G26140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.49.1e-2647108159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                   ldDg+ WrKYGqK++++s++prsYYrCt++   gC+++++++r+++dp+  +itY geH+++
  OB03G26140.1  47 LDDGHVWRKYGQKDIQNSPHPRSYYRCTHKvdqGCTATRHIQRCENDPSNYVITYYGEHTCR 108
                   58***************************9999**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-2840110IPR003657WRKY domain
PROSITE profilePS5081125.05242110IPR003657WRKY domain
SuperFamilySSF1182901.7E-2545110IPR003657WRKY domain
SMARTSM007747.0E-3647109IPR003657WRKY domain
PfamPF031061.9E-2448108IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MQFNVGEEMQ FNVYRKLERL VGVDEERDDR LGSGRGRSSN KTVAATLDDG HVWRKYGQKD  60
IQNSPHPRSY YRCTHKVDQG CTATRHIQRC ENDPSNYVIT YYGEHTCRDP STIIPTGAIA  120
NGAGVASDGA AGANNIISFA AVRYVADAAT ATVGYGASSR LAREGTTSTA GTRPTSPSWG  180
ASGGDDVFSS SGEPFMQWDE LAAAVVHVSS AAVTSSTVGS APAAENDGAN GDTAAGGGGE  240
GGSGGGGGPG SFPSSPSTGS LGFVVSIGHD GG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-3240108169OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G26140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1052442e-87AK105244.1 Oryza sativa Japonica Group cDNA clone:001-113-F08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651348.21e-127PREDICTED: WRKY transcription factor 55-like
TrEMBLJ3LNI80.0J3LNI8_ORYBR; Uncharacterized protein
STRINGOB03G26140.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139812526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.13e-22WRKY DNA-binding protein 46