PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB03G28050.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 164aa MW: 18954.5 Da PI: 9.06

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB03G28050.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.2	2.5e-15	38	90	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 +WT+eEd l+++v + G ++W+++ar m+ +R++ qc++rw+++l OB03G28050.1 38 AWTPEEDACLARLVGENGFRHWRRVARDMPptaggrpRHRSPRQCRDRWRDHL 90 8*************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.04	31	94	IPR017930	Myb domain
SMART	SM00717	1.6E-12	35	92	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-16	38	107	IPR009057	Homeodomain-like
CDD	cd00167	7.64E-11	38	90	No hit	No description
Pfam	PF00249	4.2E-14	38	90	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.99E-17	38	112	IPR009057	Homeodomain-like
PROSITE profile	PS50090	4.739	91	144	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MEETAEAFPS SAERETSTAS TPGRERLVLR IMIPLSPAWT PEEDACLARL VGENGFRHWR 60 RVARDMPPTA GGRPRHRSPR QCRDRWRDHL ARDVYRRPFT ADDDAELARL LLARDDGERS 120 WKDISRAARR GSEIILLLRW RELCGSDAFL RKLWCPLPPV QPSD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB03G28050.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC213125	3e-88	AC213125.2 Oryza glaberrima clone OG_BBa0015M04, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006645625.1	1e-44	PREDICTED: transcription factor MYB44-like
TrEMBL	J3LP29	1e-112	J3LP29_ORYBR; Uncharacterized protein
STRING	OB03G28050.1	1e-113	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8360	13	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27785.1	2e-07	myb domain protein 118