PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G29100.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 132aa    MW: 15261.5 Da    PI: 10.5589
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G29100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.63.4e-191663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEde+lv +v+q+G g+W++ +++ g++R+ k+c++rw +yl
     OB03G29100.1 16 KGPWTREEDEKLVAYVEQHGHGSWRSLPKRAGLNRCCKSCRLRWINYL 63
                     79********************************************97 PP
2Myb_DNA-binding56.65.8e-1869112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eE++ ++ ++  lG++ W+tIa +++ gRt++++k++w++
     OB03G29100.1  69 RGNFTPEEEQAIITLHSVLGNK-WSTIATRLP-GRTDNEIKNYWNT 112
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-26766IPR009057Homeodomain-like
PROSITE profilePS5129418.4831163IPR017930Myb domain
SuperFamilySSF466898.99E-3313110IPR009057Homeodomain-like
SMARTSM007179.8E-161565IPR001005SANT/Myb domain
PfamPF002497.5E-171663IPR001005SANT/Myb domain
CDDcd001675.36E-121863No hitNo description
PROSITE profilePS5129426.74264118IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-2867118IPR009057Homeodomain-like
SMARTSM007174.3E-1668116IPR001005SANT/Myb domain
PfamPF002495.4E-1669112IPR001005SANT/Myb domain
CDDcd001673.88E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MGRLRPPCCD ESSVKKGPWT REEDEKLVAY VEQHGHGSWR SLPKRAGLNR CCKSCRLRWI  60
NYLRPDIKRG NFTPEEEQAI ITLHSVLGNK WSTIATRLPG RTDNEIKNYW NTRLKKRLIG  120
AGIDPATHRA RP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29161187108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G29100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2434281e-160AK243428.1 Oryza sativa Japonica Group cDNA, clone: J100067L15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631094.18e-92transcription factor MYB93
RefseqXP_015689920.16e-93PREDICTED: myb-related protein 308-like
SwissprotQ9SBF35e-69MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A0E0NVZ72e-90A0A0E0NVZ7_ORYRU; Uncharacterized protein
TrEMBLI1PBW42e-90I1PBW4_ORYGL; Uncharacterized protein
TrEMBLJ3LPD46e-93J3LPD4_ORYBR; Uncharacterized protein
TrEMBLQ75LP72e-90Q75LP7_ORYSJ; Myb-like DNA-binding domain containing protein, expressed
STRINGORUFI03G20530.13e-91(Oryza rufipogon)
STRINGOS03T0388600-013e-91(Oryza sativa)
STRINGOB03G29100.11e-93(Oryza brachyantha)
STRINGORGLA03G0186000.13e-91(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP180181010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-73myb domain protein 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]