PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G30130.1
Common NameLOC102713535
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 341aa    MW: 35987.2 Da    PI: 4.4584
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G30130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS104.12e-3294338120374
          GRAS 120 sqGlQWpaLlqaLasRp..egppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlq 209
                   s +  Wp+Ll++L+ +p  + pps+R+T+ g+++++      +         L ++A+++++++++    a +l+++   +  + pgEal+V+l+++
  OB03G30130.1  94 SSPSEWPTLLESLTRQPggRAPPSVRLTVAGPEATSpapfsASPPGYDFSPHLLRYAKSINLELDIGR--AATLDAV---QGFCTPGEALVVCLQFR 185
                   56789************656699*********888899998888899999****************97..4556655...44499************ PP

          GRAS 210 lhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaer 305
                   l ++      + +er+++L+ v +l+P++vv++e ++   ++s   +f+  le  + +++s++a +  ++ +er+ +E+e  g ++   va eg+e 
  OB03G30130.1 186 LGHTA-----T-EERRDILRKVIELKPELVVLSELDSGG-DGSASGEFAARLELLWRFLESTSAAFKGKDvDERRLLENE-AGTSLATDVAGEGRE- 273
                   *9998.....3.44789****************999876.7777899***************888766666999999999.888888889999888. PP

          GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg.yrveee..sgslvlgWkdrpLvsvSaWr 374
                            Wrer+ +aGF++++++ +a+++ak+llrk++ ++   +v +    g++ l Wk++p+ ++S Wr
  OB03G30130.1 274 --------GWRERMAAAGFEEASFGAEAVESAKSLLRKYDgGWDmATVVSAagAGAVALRWKGQPVSFCSLWR 338
                   ........9*******************************755424444433366777**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098514.3621314IPR005202Transcription factor GRAS
PfamPF035147.1E-3094338IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MKEMNYHEQE RQGLAAATSS SNNGFDWFDE SMSSFLAAGV DLGGGDAWWA VSPAAQQDDI  60
GSVVAQTLSP PPAAPAATSP LAYASPGIAS PAASSPSEWP TLLESLTRQP GGRAPPSVRL  120
TVAGPEATSP APFSASPPGY DFSPHLLRYA KSINLELDIG RAATLDAVQG FCTPGEALVV  180
CLQFRLGHTA TEERRDILRK VIELKPELVV LSELDSGGDG SASGEFAARL ELLWRFLEST  240
SAAFKGKDVD ERRLLENEAG TSLATDVAGE GREGWRERMA AAGFEEASFG AEAVESAKSL  300
LRKYDGGWDM ATVVSAAGAG AVALRWKGQP VSFCSLWRPT P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-1184340198475Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G30130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126111e-166CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689934.10.0PREDICTED: nodulation-signaling pathway 1 protein
TrEMBLJ3LPN70.0J3LPN7_ORYBR; Uncharacterized protein
STRINGOB03G30130.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.14e-40GRAS family protein