PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G30290.1
Common NameLOC102719750
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 314aa    MW: 34294.2 Da    PI: 9.6927
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G30290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.16.3e-33163219158
     CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                   +ep++VNaKQy++Il+RRq+Rakle+++k+  k+rkpylheSRh+hA++R+RgsgGrF
  OB03G30290.1 163 EEPIFVNAKQYHAILRRRQTRAKLEAQNKM-VKGRKPYLHESRHRHAMKRARGSGGRF 219
                   69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.4E-36161222IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.75162222IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.4E-28164219IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-24165187IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860167187IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.2E-24196219IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MIMLSQEMEN HPVQFMGKAN YDFLSGNGYP IKQLVHRNSD GDSSPTKSGQ SHQEASAASD  60
SSLNGQHTSA QSVFVPSDIN HNDSYEKGDH GTKSVLSLGN TEAAFPPSKF DYNQPFACVS  120
YPYGTDPYYG GVLTGYTSHA FVHPQISGAA NSRMPLPVVP SAEEPIFVNA KQYHAILRRR  180
QTRAKLEAQN KMVKGRKPYL HESRHRHAMK RARGSGGRFL TKKELLELQQ QNPPPVSPQA  240
TTGGGRTSGG AMILGKNLCP ENSTSRSPST PTGSEISSIS FGGSMLAHHQ EHISFSSADH  300
RPTMNQNHHV PIMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-23163239278NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203212RHRHAMKRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G30290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0621350.0AK062135.1 Oryza sativa Japonica Group cDNA clone:001-045-F05, full insert sequence.
GenBankEU8470110.0EU847011.1 Oryza sativa Japonica Group clone KCS132A05 CCAAT-binding transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650188.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like
RefseqXP_006650189.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like
RefseqXP_015691247.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like
RefseqXP_015691248.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like
RefseqXP_015691249.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like
RefseqXP_015691250.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like
TrEMBLJ3LPQ30.0J3LPQ3_ORYBR; Uncharacterized protein
STRINGOB03G30290.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.11e-36nuclear factor Y, subunit A6