PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G31410.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 623aa    MW: 66460.6 Da    PI: 6.5378
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G31410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS272.81.1e-832226222374
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshlt 97 
                    +lL+ecA+av+++d +++q+l++ l+elasp+gd           +L arl+ s++++ ++l++ ++++  s +++  + l f+e+sP+  f+h++
  OB03G31410.1 222 AQLLMECARAVAARDSQRVQQLMWMLNELASPYGD-----------GLFARLTTSGPRTLRTLAAASDRN-ASFDSTRRTALkFQELSPWAPFGHVA 306
                   589*******************************7...........577888888888888887777763.344444444445************** PP

          GRAS  98 aNqaIleavege................ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg...skeeleetgerLakfAeelgv 174
                   aN aIle + ++                 r+Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v++ ++     ++ ++e+g+rL+kfA+ +gv
  OB03G31410.1 307 ANGAILETFLEAaaagassssssssaqpPRLHILDLSNTFCTQWPTLLEALATRSsDDTPHLSITTVVPTAAPsaaAQRVMREIGQRLEKFARLMGV 403
                   *******986655566677777777777789************************8889********996655788999****************** PP

          GRAS 175 pfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse............sFle 255
                   pf+f+++++  +l+dl+l  L++++     alaVn+v +l  +   s+  +  rd+++  +++l+P+vv+vve+ead+ ++            +F++
  OB03G31410.1 404 PFRFRAVHHAgDLADLDLAGLDLREggaTTALAVNCVNALRGVA--SGGARR-RDAFVASLRRLEPRVVTVVEEEADLAASeadsssesdteaTFMK 497
                   ******97767**************888889************8..455444.89********************9995555899999********* PP

          GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                    f e l+++s  +dsle+++p++s+er  +Er+ +gr+iv++v+c  +e+ er+e+ ++W +r+++aGF+p+++se++a+++++llr++  +g+++ 
  OB03G31410.1 498 VFGEGLRFFSEYMDSLEESFPKTSNERLALERA-VGRAIVDLVSCPASESSERRENGASWARRMRSAGFTPAAFSEDVADDVRSLLRRYR-EGWSMR 592
                   *********************************.*******************************************************9.888887 PP

          GRAS 353 ee........sgslvlgWkdrpLvsvSaWr 374
                   +          + ++l Wk++p+v++SaW+
  OB03G31410.1 593 DAsgtdadaaAAGAFLAWKEQPVVWASAWK 622
                   444445555578899**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.126195595IPR005202Transcription factor GRAS
PfamPF035143.8E-81222622IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MDTLFRLVSF HHHHHHHHQA ASSSPDQPHK SRGSSSSSSS SSSHYTHNHS YYHYSHSHSH  60
SHYNTNTNNN STNTNADGDG DGSYYYHHHH DGSGGAGGGA GGGGGYYYAG ERPAAYLEEC  120
GKGHRFYMDE DFSSSSSSRQ FHSGTGAPQQ QQQPSGAPTP PAPPPPPSTS SPAGGHGLFE  180
AADFSFPQVD ISLDFGSPAV SSSSGAGGAG AASSSSSGRW AAQLLMECAR AVAARDSQRV  240
QQLMWMLNEL ASPYGDGLFA RLTTSGPRTL RTLAAASDRN ASFDSTRRTA LKFQELSPWA  300
PFGHVAANGA ILETFLEAAA AGASSSSSSS SAQPPRLHIL DLSNTFCTQW PTLLEALATR  360
SSDDTPHLSI TTVVPTAAPS AAAQRVMREI GQRLEKFARL MGVPFRFRAV HHAGDLADLD  420
LAGLDLREGG ATTALAVNCV NALRGVASGG ARRRDAFVAS LRRLEPRVVT VVEEEADLAA  480
SEADSSSESD TEATFMKVFG EGLRFFSEYM DSLEESFPKT SNERLALERA VGRAIVDLVS  540
CPASESSERR ENGASWARRM RSAGFTPAAF SEDVADDVRS LLRRYREGWS MRDASGTDAD  600
AAAAGAFLAW KEQPVVWASA WKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-14718462315420Protein SHORT-ROOT
5b3h_E1e-14718462315420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G31410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2311270.0AC231127.1 Oryza minuta clone OM__Ba0188M20, complete sequence.
GenBankAC2311290.0AC231129.1 Oryza minuta clone OM__Ba0174K19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690614.10.0PREDICTED: LOW QUALITY PROTEIN: protein SHORT-ROOT 2-like
SwissprotQ75I130.0SHR2_ORYSJ; Protein SHORT-ROOT 2
TrEMBLJ3LQ150.0J3LQ15_ORYBR; Uncharacterized protein
STRINGOB03G31410.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-123GRAS family protein