PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G31500.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 209aa    MW: 22485.3 Da    PI: 10.9477
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G31500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.7e-16128177255
           AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   gy+GV+ +   grW++eIrd       +  r+++g+++tae Aa+a++a +++++g
  OB03G31500.1 128 GYRGVHKRT-YGRWASEIRDtK-----KgHRVWIGTYDTAEAAARAYDAEARRIHG 177
                   8*****888.8*********33.....34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-18128185IPR016177DNA-binding domain
PfamPF008475.1E-9128176IPR001471AP2/ERF domain
PROSITE profilePS5103220.363128185IPR001471AP2/ERF domain
SMARTSM003802.3E-24128191IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-25129185IPR001471AP2/ERF domain
PRINTSPR003674.0E-8129140IPR001471AP2/ERF domain
PRINTSPR003674.0E-8151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MCRKKRSSHG DNIVPNHGAL PPLQSAVEEY EGRLGQEGLR RRREEINDGD RPENGLLRLK  60
EVVEDEIRAV PPPPRGAPPP GKAAVESDKS LASQQLGGIG GSGSTTRGGG GKPKRGGAGK  120
QPAASRHGYR GVHKRTYGRW ASEIRDTKKG HRVWIGTYDT AEAAARAYDA EARRIHGCKA  180
KTNFTAGERR PAPVAKACRS KRPKKGGSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-131251841071Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G31500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690636.11e-104PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLJ3LQ241e-148J3LQ24_ORYBR; Uncharacterized protein
STRINGOB03G31500.11e-148(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15980813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.19e-11related to AP2 6l