PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB03G31560.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 210aa MW: 21951.2 Da PI: 8.4196

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB03G31560.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	84.5	1.6e-26	2	112	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer.........edamsslvyeAearardPvyGavgvilkl 83 +C++C+vlr++C+++Cvl+p++ +++q +++ +v+k+FG++ +l++++a+p+ +r +++sl+yeA r+ +Pv+Gavg+++++ OB03G31560.1 2 SCNGCRVLRKGCSDGCVLRPCLqwidaADAQGHATVFVAKFFGRAGLLSFISAVPDAQRpgtyvcmyaCPLFQSLLYEAAGRTINPVHGAVGLLWTG 98 6*******************9998656778***********************999999998889********************** PP DUF260 84 qqqleqlkaelall 97 +++l+q++++++l+ OB03G31560.1 99 NWHLCQAAVDTVLR 112 ******998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.586	1	116	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.8E-21	2	109	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MSCNGCRVLR KGCSDGCVLR PCLQWIDAAD AQGHATVFVA KFFGRAGLLS FISAVPDAQR 60 PGTYVCMYAC PLFQSLLYEA AGRTINPVHG AVGLLWTGNW HLCQAAVDTV LRGGSIGPLP 120 ELAGAGGDLY GAARRNGGWS TFSTAKRVRK AEVPAAPSCD LGLCLSPGSP PAAGERRAAL 180 RRPGTPSMSS DESVTTTGGE RDPVLLNLFV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB03G31560.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU405903	1e-140	CU405903.1 Oryza rufipogon (W1943) cDNA clone: ORW1943S102O12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006650230.1	1e-140	PREDICTED: LOB domain-containing protein 37
Swissprot	Q9FN11	2e-68	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	J3LQ30	1e-150	J3LQ30_ORYBR; Uncharacterized protein
STRING	OB03G31560.1	1e-151	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	1e-67	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]