PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G33980.1
Common NameLOC102721910
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 227aa    MW: 23971 Da    PI: 9.0325
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G33980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000778100123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C+ Cg+ Fs+   L  H  +H
  OB03G33980.1  78 HRCSVCGRAFSSYQALGGHKTSH 100
                   79**********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.21E-1077100No hitNo description
PROSITE profilePS5015711.53178105IPR007087Zinc finger, C2H2
PfamPF139125.7E-1278102IPR007087Zinc finger, C2H2
SMARTSM003550.03178100IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SuperFamilySSF576675.21E-10143170No hitNo description
PfamPF139123.0E-14147172IPR007087Zinc finger, C2H2
PROSITE profilePS501579.66148170IPR007087Zinc finger, C2H2
SMARTSM003550.043148170IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280150170IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVSMAVEKVL DGAAAATMSS PASDAEGWSK RKRSRRHRAA APTEEYLALS LLMLARGHRD  60
DRPAVPAARQ EEEEKQQHRC SVCGRAFSSY QALGGHKTSH RPRTPTKTAV LVPADDEPAA  120
LAATRTTASP SPAASSSNSG SGGGSKAHEC SVCNKTFPTG QALGGHKRCH YEGPIGSSAG  180
RGFDLNLPAA LPADVITDRR LPLPAAEEEE EVLSPLAFKK PRLMIPA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00399DAPTransfer from AT3G49930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G33980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1355001e-41AC135500.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone OSJNBa0034J04 map S1466, complete sequence.
GenBankAC1369721e-41AC136972.3 Oryza sativa chromosome 3 BAC OSJNBb0007E22 genomic sequence, complete sequence.
GenBankAK2879431e-41AK287943.1 Oryza sativa Japonica Group cDNA, clone: J075021K20, full insert sequence.
GenBankAP0149591e-41AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAY2891891e-41AY289189.1 Oryza sativa (japonica cultivar-group) zinc finger transcription factor OsZFP34 mRNA, complete cds.
GenBankAY3058681e-41AY305868.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP31 (ZFP31) mRNA, complete cds.
GenBankCP0126111e-41CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankEU7178391e-41EU717839.1 Oryza sativa Indica Group cultivar PA64s C2H2 zinc finger (zf) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650277.21e-164PREDICTED: zinc finger protein 1-like
SwissprotQ424308e-38ZFP1_WHEAT; Zinc finger protein 1
TrEMBLJ3LQS21e-163J3LQS2_ORYBR; Uncharacterized protein
STRINGOB03G33980.11e-164(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.13e-28zinc-finger protein 1