PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G34210.1
Common NameLOC102706825
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 304aa    MW: 33007.6 Da    PI: 4.6202
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G34210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.2e-102312711055
                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   r+RR+riN+++  L+ l+P+      +K++ +++Le+A++Y+k Lq
  OB03G34210.1 231 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAMHYVKFLQ 271
                   9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-14220287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.691221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-12225284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-11227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.41E-12230275No hitNo description
PfamPF000102.1E-7231271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEPGGVIAEA AWSSLDMSSQ AAEESEMMAQ LLGTCFPSSN GEDDHQELAW SGDASSAYYL  60
HCNASSSAYS STSSNSAGSF TLIAPSEYEG YYLSESNGAL GIQEQGAAQF MDVILNRNDD  120
LGFEDLADSS VNLLDSIGAS NKRKIQEQGR LDDQTKSRKP TKKAGSKRAK KAMQCEGEDG  180
SIAVTNGQSL SCCTSENDSI VSQESPVAAK PNSKAQSGHR SATDPQSLYA RKRRERINER  240
LKILQNLVPN GTKVDISTML EEAMHYVKFL QLQIKLLSSD EMWMYAPIAY NGMNIGIDLN  300
LSQH
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G34210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1072061e-105AC107206.4 Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence.
GenBankAP0149591e-105AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650306.10.0PREDICTED: transcription factor bHLH139-like
TrEMBLJ3LQU50.0J3LQU5_ORYBR; Uncharacterized protein
STRINGOB03G34210.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-49bHLH family protein