PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G34310.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 128aa    MW: 14445.9 Da    PI: 11.6203
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G34310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.15.1e-16291121195
                   HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
            B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                   +++++l l  ++a++  ++   s++ ++ +++g++W   +  +  sgr +l +GW +F+++n+L++gD+++F+l ++ ++++l++ 
  OB03G34310.1  29 SSRCQLELGARYAAAVRLP--DSRQSVVLQRRGERWPAAMEAKSASGRRFLVGGWHRFARDNRLRVGDVCLFELRRKqQQGKLTMA 112
                   5679999999999999877..4445777889*********9999999999999********************9977788877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-208115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-189115IPR015300DNA-binding pseudobarrel domain
CDDcd100175.82E-1814116No hitNo description
SMARTSM010197.9E-619120IPR003340B3 DNA binding domain
PROSITE profilePS5086311.99819119IPR003340B3 DNA binding domain
PfamPF023621.2E-1329112IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MVKEEVRSIQ SKVPVYVAIM KKTNVGLTSS RCQLELGARY AAAVRLPDSR QSVVLQRRGE  60
RWPAAMEAKS ASGRRFLVGG WHRFARDNRL RVGDVCLFEL RRKQQQGKLT MAVHVIFAAS  120
TSSRCLID
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G34310.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689972.13e-81PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0619800-like
SwissprotQ6AV222e-48Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLJ3LQV52e-88J3LQV5_ORYBR; Uncharacterized protein
STRINGOB03G34310.13e-89(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-10B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]