PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G34330.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 466aa    MW: 52609.4 Da    PI: 9.0248
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G34330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.22e-15179276499
                   E-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEE CS
            B3   4 vltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkv 96 
                   v+++s+v++  + lv+ k +a+++  +  +s+t+tl+   ++++W+ ++ +rk + +++l + W +Fv++n++kegD+++F+ +  + +ef  +v++
  OB03G34330.1 179 VMKHSNVNSPhASLVIAKLYASTYFPN--TSQTITLQRqGKNKKWRPRYYIRKDRPGHILYGRWINFVRDNHIKEGDICIFHAMkFTrEEFGATVHL 273
                   55566666544889**********855..6779999885666*******77999999*************************654445888888888 PP

                   E-S CS
            B3  97 frk 99 
                   +r+
  OB03G34330.1 274 LRA 276
                   875 PP
2B333.38.9e-11373445474
                   E-..-HHHHT..T-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
            B3   4 vltpsdvlks..grlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                   ++++s+v++     l l k+f ++h   +g+   ++   l+  +g  W+v+++ ++++++ +lt+GW+eFv++++L
  OB03G34330.1 373 IMKRSSVGTDglYTLKLGKQFSTRHlppQGD--HQVLTLLMEGEGHAWRVRMC-SRSGDAQTLTTGWREFVRDKHL 445
                   677788888844457999*******987555..4456677778*********4.66666699************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-19167278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-20170263IPR015300DNA-binding pseudobarrel domain
CDDcd100174.07E-17174258No hitNo description
SMARTSM010190.0023176277IPR003340B3 DNA binding domain
PROSITE profilePS5086311.364177277IPR003340B3 DNA binding domain
PfamPF023621.0E-14178276IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-12362446IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-11363446IPR015300DNA-binding pseudobarrel domain
CDDcd100173.55E-10368445No hitNo description
SMARTSM010190.095370464IPR003340B3 DNA binding domain
PfamPF023621.3E-8371445IPR003340B3 DNA binding domain
PROSITE profilePS508637.105410466IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MAGQGSKMKR SFDCCKRYVD HLNGKMKCFH IQMRANSGHS IIIPNKFLEQ FGGKISTTIE  60
LKSPKGIVYV VKVLILDSDG CEKAFPRAGT RKTCRAPERN ADPIDISGST HDGTMESSES  120
EECTESSSSE HESSHELDDP QTTLAPILSY GTSLSEAQEE EVAMLIRDIQ PEIPVYVAVM  180
KHSNVNSPHA SLVIAKLYAS TYFPNTSQTI TLQRQGKNKK WRPRYYIRKD RPGHILYGRW  240
INFVRDNHIK EGDICIFHAM KFTREEFGAT VHLLRARKSH SFGEFCTNPK IVDSKYVGTR  300
PKMTGSSVKE EPYDGQCNKG QGKRQGPQNF DDSRGSSKPY ILSHRDSLTD EQVGKVEEVA  360
HSIQPGVPVY VSIMKRSSVG TDGLYTLKLG KQFSTRHLPP QGDHQVLTLL MEGEGHAWRV  420
RMCSRSGDAQ TLTTGWREFV RDKHLHLPAD EQREQAHHDR PRHSSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G34330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690668.10.0PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0620400-like
SwissprotQ851W51e-168Y3204_ORYSJ; B3 domain-containing protein Os03g0620400
TrEMBLJ3LQV70.0J3LQV7_ORYBR; Uncharacterized protein
STRINGOB03G34330.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]