PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G34360.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 533aa    MW: 60351.5 Da    PI: 9.6486
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G34360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.91e-1460141996
                   HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
            B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                   +++k ++ ++p+kf++++ggk   s+t+ le+++g+++ vk+  +k+ +++vl+ G + F++a++++e D+++F+++++s+f   v++
  OB03G34360.1  60 SASKASWNIIPNKFLNQFGGK--ISRTIELESPKGNVYVVKV--TKHMNKTVLQCGREAFADAHQIEESDSLLFRHIENSRF--EVTF 141
                   566667789*********999..888****************..*********************************99999..5544 PP
2B340.16.6e-13271361493
                   E-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS
            B3   4 vltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 
                   + ++s+v+++   lv+ k++a+eh     +s+t+tl+   ++++W  ++ +rk + +y+l++ W +Fv+ n+L+egD++vF+l   + ++f+ +
  OB03G34360.1 271 TIKHSNVNSHhPTLVIAKNYASEHFRR--TSQTITLKCqGKNKKWHPRFYIRKDQVGYILQGHWIDFVR-NHLEEGDICVFHLRkFTgRKFRAT 361
                   55667777764579**********866..5567888874577*******77888888***********7.88**********763333455444 PP
3B344.92.1e-144515331599
                   -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE-S CS
            B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfrk 99 
                   ++ + +++a+++    +e++++t   + g+sW+v ++++k++ r +l++GWk+F+ +ngL++ D ++F+l   + ++ +++v+++rk
  OB03G34360.1 451 IIAICRNYASKYLP--REHQMVT-LRRGGKSWQVWFRVNKHDLR-MLSRGWKKFAGDNGLQVVDACLFELLsVDeNSYTMNVHIIRK 533
                   45789999999952..3443555.567*********88888877.89**********************653445888899998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.58752145IPR003340B3 DNA binding domain
SMARTSM010190.00455145IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-1559151IPR015300DNA-binding pseudobarrel domain
CDDcd100175.62E-1159143No hitNo description
PfamPF023621.9E-1259141IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-1465147IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-16259365IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-17263357IPR015300DNA-binding pseudobarrel domain
CDDcd100173.56E-16266356No hitNo description
SMARTSM010190.0043268369IPR003340B3 DNA binding domain
PROSITE profilePS508638.614269368IPR003340B3 DNA binding domain
PfamPF023621.8E-11269364IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-19427532IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-18428532IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-16433532No hitNo description
SMARTSM010191.9E-4435525IPR003340B3 DNA binding domain
PROSITE profilePS5086311.899435533IPR003340B3 DNA binding domain
PfamPF023622.9E-13452533IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MYITVSSFGA SSLHHHQFVE LVCKGKMRAD FEHSMSVSRM IGRRVQDDAR SNPSRQAISS  60
ASKASWNIIP NKFLNQFGGK ISRTIELESP KGNVYVVKVT KHMNKTVLQC GREAFADAHQ  120
IEESDSLLFR HIENSRFEVT FLDSDGCEKV FSCAGKKMAS SAREINVDHI DISSSSQDDS  180
TQSSGGERRR DNLRGKTAKL AASSSSGESG EEATESSTSE HELFDDLVDP QTPAVPGYIL  240
SRGTSLSAAQ EEKIDMLVED IRPEVPLYVT TIKHSNVNSH HPTLVIAKNY ASEHFRRTSQ  300
TITLKCQGKN KKWHPRFYIR KDQVGYILQG HWIDFVRNHL EEGDICVFHL RKFTGRKFRA  360
TVHLLCETKS HSLGTLRASP KRIDSRDCRM RPRVTGARRA SSKHYVLSDR ASLTAEQMTK  420
VEEIVHSIQS DVPIYVSIMS KINVGTDGLY IIAICRNYAS KYLPREHQMV TLRRGGKSWQ  480
VWFRVNKHDL RMLSRGWKKF AGDNGLQVVD ACLFELLSVD ENSYTMNVHI IRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G34360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630232.20.0LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0620500-like
SwissprotQ851W50.0Y3204_ORYSJ; B3 domain-containing protein Os03g0620400
TrEMBLJ3LQW00.0J3LQW0_ORYBR; Uncharacterized protein
STRINGOB03G34360.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.12e-10B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]