PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G34380.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 298aa    MW: 34098.9 Da    PI: 8.754
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G34380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.36e-1827115197
                   EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                   ffkv+    ++ + r+++p +f  ++  gk   ++t++l+++sg +++ ++  +k+ ++  l++GWk F+ a++L+ gDf+vF++++  se   ++ 
  OB03G34380.1  27 FFKVM--IGHF-RERMTIPDEFQ-QYfRGK--IPRTIKLRSRSGCTFDAEV--TKNLSKLSLQSGWKAFATAHDLQMGDFLVFTYEEGiSEL--KFL 113
                   56666..4444.457*******8.554666..6779***************..********************************9855555..666 PP

                   EE CS
            B3  96 vf 97 
                   +f
  OB03G34380.1 114 IF 115
                   66 PP
2B345.71.1e-142162961698
                   EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
            B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                   + +  ++a+ +  ++k     ++l+ ++g+ W+v+++  +k g+  l+kGW  F+++n+L +gD+++F+l ++ ++++++v+v+ 
  OB03G34380.1 216 VDICPEYADVYlPSNK--RLNIRLQ-RHGKNWDVQCRT-NKIGSKRLSKGWICFARDNNLHVGDICLFELLNNkECTTMNVHVIP 296
                   5566666655543343..3356654.6*********64.4444568***********************99888*******9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.40724118IPR003340B3 DNA binding domain
SuperFamilySSF1019361.1E-1925124IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-1527115IPR003340B3 DNA binding domain
SMARTSM010191.7E-727118IPR003340B3 DNA binding domain
CDDcd100172.05E-2327115No hitNo description
Gene3DG3DSA:2.40.330.107.4E-1937130IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-18192295IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-15193295IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.007204298IPR003340B3 DNA binding domain
PfamPF023625.0E-13214296IPR003340B3 DNA binding domain
CDDcd100176.09E-16218296No hitNo description
PROSITE profilePS5086311.096233298IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MRRPGARCKE EHAHFNRNHV DGPDMNFFKV MIGHFRERMT IPDEFQQYFR GKIPRTIKLR  60
SRSGCTFDAE VTKNLSKLSL QSGWKAFATA HDLQMGDFLV FTYEEGISEL KFLIFGPSGC  120
EKVPSCSLHD HSPSNSQTQW GSSKQENNIA NIEDAALQGD DFQVHPLPGC IIPKRTRLTD  180
AQKQQLENKV QAIHSEIPIY GCILRKTSIQ GKPQTVDICP EYADVYLPSN KRLNIRLQRH  240
GKNWDVQCRT NKIGSKRLSK GWICFARDNN LHVGDICLFE LLNNKECTTM NVHVIPEK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G34380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689974.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
SwissprotQ851V51e-141Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLJ3LQW20.0J3LQW2_ORYBR; Uncharacterized protein
STRINGOB03G34380.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-20B3 family protein