PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G34390.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 294aa    MW: 33482.6 Da    PI: 10.0125
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G34390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.57.7e-2125112298
                   EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
            B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   fk++     ++++ +++p++f++++ggk   +k ++le+++g +++v++   k  gr++l++GW ++v+a++Lk+gDf+vFk++g+s+   +  +f+
  OB03G34390.1  25 FKIM--VGDFAES-MTIPNEFLRNFGGK--IPKSVKLETRNGLTFDVQV--AKDLGRVFLQSGWTSYVSAHDLKTGDFLVFKYSGHSQL--KTLIFD 112
                   5555..4455555.9*******999999..6678***************..********************************997776..666665 PP
2B340.64.6e-132282903699
                   EEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
            B3  36 ltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                   + + + +g+ W+v++++ +++s+r +l +GWk+F+ +n+L  gD+++F+l ++ ++  ++v+++rk
  OB03G34390.1 228 V-VLQHNGKCWNVRCCVtTQNSKR-LL-AGWKKFAGDNKLHPGDICLFQLLENeKKYVMNVHIIRK 290
                   4.45569********985555555.45.5********************99887999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.4E-2219116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.81621114IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-2221119IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-1922112No hitNo description
PfamPF023626.7E-1924111IPR003340B3 DNA binding domain
SMARTSM010198.2E-924114IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-19187291IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-19187291IPR015300DNA-binding pseudobarrel domain
CDDcd100173.93E-14192289No hitNo description
PROSITE profilePS5086311.378195291IPR003340B3 DNA binding domain
SMARTSM010190.002196291IPR003340B3 DNA binding domain
PfamPF023622.6E-11227290IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MQGGSLQRGA YFDCNRTNGE DKHFFKIMVG DFAESMTIPN EFLRNFGGKI PKSVKLETRN  60
GLTFDVQVAK DLGRVFLQSG WTSYVSAHDL KTGDFLVFKY SGHSQLKTLI FDPNGCEKVC  120
SYLVKKNAAH SQQNENKKRK QRENSNKLSR SPMKPSEDDL VPGCILPRRT HLDRLQRKIL  180
TEKVKALHSE TPIYGYVMNN SSIRGIPCTV VISANYGDLY LPFEDGTVVL QHNGKCWNVR  240
CCVTTQNSKR LLAGWKKFAG DNKLHPGDIC LFQLLENEKK YVMNVHIIRK KMKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G34390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629587.11e-150putative B3 domain-containing protein Os03g0621600
SwissprotQ851V11e-134Y3160_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLJ3LQW30.0J3LQW3_ORYBR; Uncharacterized protein
STRINGOB03G34390.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-22B3 family protein