PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G34400.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 223aa    MW: 24662.2 Da    PI: 4.8964
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G34400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.21.5e-18411221299
                   HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
            B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   ++  +++p +fa++++g    s ++ l+ +sg++W++ +  + + g++vl++GWkeFv+ n ++egD ++F+++g s+f   v +f+ 
  OB03G34400.1  41 TE-SMTVPARFADNFNGH--ISEEVNLRPPSGKTWSIGV-ASSGAGEVVLQSGWKEFVDGNSVQEGDCLLFRYSGVSSF--DVLIFDP 122
                   33.49*******888666..6779***************.4555566***************************99999..8888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-2427125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-2328128IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.87529123IPR003340B3 DNA binding domain
CDDcd100171.36E-1830121No hitNo description
SMARTSM010191.3E-932123IPR003340B3 DNA binding domain
PfamPF023621.4E-1540121IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MGTLKMGKNC SVCKEWQEHC YWSHMADDSK HFLKHMAGDF TESMTVPARF ADNFNGHISE  60
EVNLRPPSGK TWSIGVASSG AGEVVLQSGW KEFVDGNSVQ EGDCLLFRYS GVSSFDVLIF  120
DPSGCEKASP HFAESHGGAG RNQDECEAKE DDDDEDVVKG VVEGGYYFGR NGRVGEYNLR  180
EEDKEEISRF PVPLHPGNPV FVHVIHAAHI RTSRYSILAS DSP
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G34400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086601e-123AK108660.1 Oryza sativa Japonica Group cDNA clone:002-148-F01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650312.11e-131PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0622200-like
SwissprotQ10GM31e-114Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBLJ3LQW41e-165J3LQW4_ORYBR; Uncharacterized protein
STRINGOB03G34400.11e-166(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-25B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]