PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G34420.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 219aa    MW: 22870.7 Da    PI: 9.7271
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G34420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.45.8e-32114167255
       G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  OB03G34420.1 114 PRMRWTTALHAHFVQAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 167
                   9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-29111167IPR009057Homeodomain-like
SuperFamilySSF466895.91E-16111167IPR009057Homeodomain-like
TIGRFAMsTIGR015574.6E-24114167IPR006447Myb domain, plants
PfamPF002496.4E-8115166IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MATTAAAPDL SLHISPPSPP DMAGSSDGGE LMEQLAEPKL SLGFGTTAYN DGGCNNLQQQ  60
QRLLHQPSQI QRFKKSASGS SLPLCGGGNS GGGAARSAGN GGGGGGGKRS SRAPRMRWTT  120
ALHAHFVQAV ELLGGHERAT PKSVLELMNV KDLTLAHVKS HLQMYRTVKG TTDRTCAEGH  180
AQMRDMGFLR RGGGEVDAFD VLGNASSIAI TNIRLVHST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-18115169357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-18115169357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-18115169357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-18115169357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G34420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690532.11e-154PREDICTED: two-component response regulator ARR1-like
TrEMBLJ3LQW61e-159J3LQW6_ORYBR; Uncharacterized protein
STRINGOB03G34420.11e-160(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.21e-31G2-like family protein