PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G35630.1
Common NameLOC107303954
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 196aa    MW: 21839.3 Da    PI: 3.92
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G35630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like65.87.4e-213488455
       G2-like  4 lrWtpeLHerFveaveqLGGsekAtPkti...lelmkvkgLtlehvkSHLQkYRl 55
                  lrW+ +LH+ Fveav+  GG+ +A P ++   +++m+v g+t +++kSHLQkYR 
  OB03G35630.1 34 LRWSDDLHKIFVEAVAFQGGPYEAKPTAVketMQTMGVTGITTQNIKSHLQKYRE 88
                  89************************7772226678899***************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.15E-112991IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-183089IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-163488IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSNSKPAQDD DASYMSSILA SRIIWAMQAT RSYLRWSDDL HKIFVEAVAF QGGPYEAKPT  60
AVKETMQTMG VTGITTQNIK SHLQKYRESF NSGAGSLQDH DVQGTISPSK EALDLTSEMV  120
RDNDAILAEM EMVNNMLMDD NIEVVETNIS VDDMQDLMNE IMLIEHNDTG IISESALDEY  180
MDDLAGYAFD LMDSTT
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G35630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691090.11e-143PREDICTED: uncharacterized protein LOC107303954 isoform X1
RefseqXP_015691091.11e-143PREDICTED: uncharacterized protein LOC107303954 isoform X1
TrEMBLJ3LR871e-142J3LR87_ORYBR; Uncharacterized protein
STRINGOB03G35630.11e-143(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154991216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.15e-15G2-like family protein