PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB03G35930.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 154aa MW: 16935 Da PI: 10.1155

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB03G35930.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	58.8	1.5e-18	65	120	45	100
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 k++p ++r da+sslvyeA+ar+rdP+yG+vg i++lqqq+e l+a+lal+++e OB03G35930.1 65 KKKDIPVQHRGDAVSSLVYEANARVRDPIYGCVGAISSLQQQVEALQAQLALAQAE 120 45678999********************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.249	9	121	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.8E-16	67	118	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MSASSSRPQF VSVYVLHKND LSSATSTLLC FAGNSLFILQ HIWLGKFLLM AMLLGTISVS 60 VNGKKKKDIP VQHRGDAVSS LVYEANARVR DPIYGCVGAI SSLQQQVEAL QAQLALAQAE 120 MVRLRMSNDY ISRRLRPMLL LICLVLFLGL VANL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-17	46	123	39	113	LOB family transfactor Ramosa2.1
5ly0_B	7e-17	46	123	39	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB03G35930.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC139174	1e-93	AC139174.3 Oryza sativa chromosome 3 BAC OSJNBb0065L20 genomic sequence, complete sequence.
GenBank	AP014959	1e-93	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	1e-93	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015690001.1	7e-36	PREDICTED: LOB domain-containing protein 4-like, partial
Swissprot	Q8LBW3	3e-23	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	J3LRB7	1e-107	J3LRB7_ORYBR; Uncharacterized protein
STRING	OB03G35930.1	1e-108	(Oryza brachyantha)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-16	LOB domain-containing protein 4

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]