PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB03G36200.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 275aa MW: 29842.4 Da PI: 7.8771

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB03G36200.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.8	7e-19	40	109	2	70
trihelix 2 WtkqevlaLiearremeerlr.rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 Wt e+++Liea++++++ r ++ + ++W++v +++++rg++rs++qC+++w+nl ++ykk+++ e + OB03G36200.1 40 WTLPETMLLIEAKKRVHDGRRpAADQGLARWRWVEDYCWRRGCQRSQNQCNDRWDNLMRDYKKVRAYELS 109 ***********99998888357899***********************************987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.0E-6	32	99	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.909	32	97	IPR017877	Myb-like domain
SuperFamily	SSF46689	2.78E-6	35	98	IPR009057	Homeodomain-like
Pfam	PF13837	4.3E-15	38	108	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MDAGGSVGAL LGQEEEGEAM NTMADAMVQV AAREYRRGNW TLPETMLLIE AKKRVHDGRR 60 PAADQGLARW RWVEDYCWRR GCQRSQNQCN DRWDNLMRDY KKVRAYELSG AGAGGGTESY 120 WVMGRGERKE RGLPANLLRE IYEAMDEVVE RRMSSGGGGA VFLTASSSGS GLADVPMAMQ 180 ASPLAQLLPR PLAETTNCSS GSPERKRRRP SQGKQPPSSS AAAASASGSL HAVPNGVSID 240 CLAPSAALLA WHHEEEEEAL AGRDAGGRVR QNRVN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	204	208	RKRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB03G36200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC135792	1e-159	AC135792.3 Oryza sativa chromosome 3 BAC OSJNBa0056E06 genomic sequence, complete sequence.
GenBank	AP014959	1e-159	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025879661.1	1e-95	trihelix transcription factor ASR3
TrEMBL	J3LRE4	0.0	J3LRE4_ORYBR; Uncharacterized protein
STRING	OB03G36200.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3294	35	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	6e-45	Trihelix family protein