PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G36850.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 279aa    MW: 30542.9 Da    PI: 5.0133
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G36850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox261.5e-082172492254
                   SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   ++yp+ +e+  LA  +gL+ +q+++WF N R +
  OB03G36850.1 217 HPYPNDHEKLMLAVTTGLSRTQISNWFINARVR 249
                   89*****************************98 PP
2BELL61.51.8e-2066129972
          BELL   9 kakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                   +akLlsll e++ r+++y  +l+ v +sFe + g g+ + Yt+l  +a+SrhF +L+ ai  ++
  OB03G36850.1  66 QAKLLSLLSELESRHEHYFGELRRVSASFEPALGAGATAGYTALMAQAMSRHFGNLRRAILRKL 129
                   58**********************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.7E-141127IPR006563POX domain
PfamPF075262.2E-245125IPR006563POX domain
PROSITE profilePS5007111.451190253IPR001356Homeobox domain
SMARTSM003891.1E-9193257IPR001356Homeobox domain
SuperFamilySSF466891.5E-17198261IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-26198259IPR009057Homeodomain-like
CDDcd000864.59E-11199254No hitNo description
PfamPF059202.5E-17210249IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MVSALRGSRY LLPAQELLRE AVSMGEVDPA IASARRGDDE GPMREGGDRA RAEASLPYDG  60
KSGGVQAKLL SLLSELESRH EHYFGELRRV SASFEPALGA GATAGYTALM AQAMSRHFGN  120
LRRAILRKLR LHAAAAARRS ALLRLAQDGD EENDDDGGDA DADGEDDDDD EDVVNRLVRR  180
TKHAAAARGG QAGRPLRGLP EDSVAVLRAW LFDHFLHPYP NDHEKLMLAV TTGLSRTQIS  240
NWFINARVRL WKPMVEEMYN DEFSDDSRED DVGGASSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-16199257563Homeobox protein Meis2
4xrm_B2e-16199257563Homeobox protein Meis2
5bng_A2e-16199257159Homeobox protein Meis2
5bng_B2e-16199257159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G36850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0646651e-118AK064665.1 Oryza sativa Japonica Group cDNA clone:002-115-B07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690669.11e-119PREDICTED: BEL1-like homeodomain protein 11
TrEMBLJ3LRK90.0J3LRK9_ORYBR; Uncharacterized protein
STRINGOB03G36850.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.14e-33BEL1-like homeodomain 11