PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G36860.1
Common NameLOC102712237
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 643aa    MW: 71251.1 Da    PI: 6.1069
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G36860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.7e-094014381954
                   HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  OB03G36860.1 401 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 438
                   664559******************************88 PP
2BELL120.29.2e-39264335172
          BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                   e+qelq+k akL+ +l+eVd++Yk+y++q+q+v+ssF++vag g+akpYt++Al++iS+hFrcLkdai +qi
  OB03G36860.1 264 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQIVVSSFDMVAGSGAAKPYTAVALQTISKHFRCLKDAINDQI 335
                   689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.0E-55188333IPR006563POX domain
PfamPF075264.7E-51194331IPR006563POX domain
PROSITE profilePS5007112.357379442IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-28381451IPR009057Homeodomain-like
SMARTSM003891.6E-9382446IPR001356Homeobox domain
CDDcd000861.49E-12382443No hitNo description
SuperFamilySSF466892.99E-17383448IPR009057Homeodomain-like
PfamPF059201.0E-17399438IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MATYYSSPGN ERDSQAMYPA DSGNSSYPVP SAIGNMLYPG NGSSGPYTEF SGIIQHQQNF  60
MELPGHPTAI SQDSSAREPN MVSSYTEQRS FGPAKDMRNE MLMHLMDGSH SAGADLIHND  120
THNSAQIEFG LLNNHNSMSV APTPGQGLSL SLNTHILAPS YPYWSAKQEL LTPHSYQGDD  180
NRMKNMQSEA SQAIRHSKYL KAAQELLDEV VSVWKSIKQK AQKDQAEAGK SDNKEADGGS  240
KGEGVSSNPQ ESTANAAPEL SAAEKQELQN KMAKLMAMLD EVDRKYKHYY HQMQIVVSSF  300
DMVAGSGAAK PYTAVALQTI SKHFRCLKDA INDQINVIRK KLGEEESSSG KEGKLTRLRY  360
IDQQLRQQRA FQQYGLLQQN AWRPQRGLPE NSVSILRAWL FEHFLHPYPK DSEKLMLARQ  420
TGLTRSQISN WFINARVRLW KPMIEDMYKE EIGEADLDSN SSSDNVPRSK DKIATSEDKE  480
DLKSSLSQTC QPSQLGESKA NIGMMNLGGA PASFHNEGNQ DDSFMNLMLK DQRPGEAEGS  540
LLHDAVVHHS DENARFMAYH LSGIGRYGNS NVSLTLGLQH AENRLSVQNT HQPGFTGAGE  600
EEIYNSTASI GVAAAASSDY ESTNQIDQRQ RFEPSPLMHD FVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-16388445158Homeobox protein Meis1
4xrs_B3e-16388445158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G36860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5249720.0AY524972.1 Oryza sativa (indica cultivar-group) benzothiadiazole-induced homeodomain protein 1 (BIHD1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650407.10.0PREDICTED: BEL1-like homeodomain protein 7
RefseqXP_006650408.10.0PREDICTED: BEL1-like homeodomain protein 7
TrEMBLJ3LRL00.0J3LRL0_ORYBR; Uncharacterized protein
STRINGOB03G36860.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-112BEL1-like homeodomain 6